BAC Information

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BAC

Clone NameMSMg01-418G23
Chromosome15 (Build37)
Map Location 47,168,477 - 47,168,875
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039438
Downstream geneLOC665130, LOC100039485, LOC100039493, Csmd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418G23.T7 (MSMg01no418_g23.b1)MSMg01-418G23.TJ (MSMg01no418_g23.g1)
ACCAG513772AG513773
length755782
length of high quality
(start - end)
525 (47 - 571)400 (76 - 475)
definitionCHROMAT_FILE: MSMg01no418_g23.b1 PHD_FILE: MSMg01no418_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:38 2005CHROMAT_FILE: MSMg01no418_g23.g1 PHD_FILE: MSMg01no418_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAATTGAGTACACTAAAGGCCTGAGAAACACATGAAAAAAAGG
TTCAACATCATTAGTCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCTACTTCACACCAGTCAGAACAAATAAGCTCAAACATCCATATGACAGC
AGATGATGGAGAGGATGTGGAGAAAGAGGAACACTTCTCCATTACTGGTG
GGATTGCAAGCTAGTACAACCACTCTGGAAATCAGTTTGGTGGTTCCTCA
GAAAATTGGGCATAGTACTACAGTATTATCCAGCAATACCTCTCCTGGGC
ATATACCTAGAAGATGCTCCAACTTCTAATAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATATTAGCCAGAAGCTGGAAAGAACGCAGAT
GTCCCTCAACACAGGAATAGATACAGAAATTGTGGTATATTTACACAATG
GAGTACTACTCAGCTATTAAAAACAATACATTTATGAAATTCTTAGGCAA
ATAGATGTATCTGGAGGATATCAACCTGAGTGAGGTAACCCAATCACAAA
AGAAATCACATGATATGCACTCACTGATAAGTGGATATTATCCCCGAAAC
TTAAATACCCATGATACTATATGCCAAACATATGAAACTCCCGAAGGAAG
ACGAAAGTGTGGAAACCTCGTTTCAACTTAAAATGTGGAAAATTACATGA
ATGGG
CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGGAATATTGCTAAAAATAAAGA
GGATCCCTGTGACCAGACAGCATAGCTAGGAAGCAAATCATCCAGGCAAG
GTTACTGACAGTGCCAGGAGAGGTTCCTCAGAAACAAAGGTACATGTAAG
ATATGAGAGCTTTTTCAAGGGTGAGGTGAATTTTGTAGATCTTATCATAA
ACAGAAATAAAGGAGCTTCTAAAACCATTATGTAAAATTTATTTCAGCAA
AGAAAAAGTTGATATTGCATAACTATAATTTCATGAGGCTCAGCCATAGC
CACATGTCCAGTCACAATGACCAATATTCAAGAGCCTGAAGCTTAAGAAA
ATAAAACAAACAAATGTCTATACCACTCTGGAAGGCTGGGGTTAGATAAT
GTGTGTGAGTGTGTGTGTGTGTGTNNATTATTNNNNNNNNNTTTTNNTTT
TTNTTTTTTTNNNNTTTTTTTTTTTTTTTNTNNTTNTNNTTTNNTTTTTT
TTTTTTNNNTTTTTTNNTTTTTTTTTTTNTNTTTTTTTTNTTTTTTTNTN
TTTTNTNTTTTTTTTTNNNTTTTTTNTTTTTTTTTTTTTTNNNNNNNNNT
TNNTTTTTTTTTTTNTNNTTTTTTTTTTTTTNTTTTTTTNTTTNTTTTTT
NTTTNTTTNTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTNTNNNNNTTTT
TTTTTTTNTTTTTTTNNTTTTTTTNTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_g23.g1 MSMg01no418_g23.g1 CHROMAT_FILE:
MSMg01no418_g23.g1 PHD_FILE: MSMg01no418_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:38 2005
         (400 letters)



>mm_chr15_47168277_47169076
          Length = 800

 Score =  733 bits (379), Expect = 0.0
 Identities = 394/399 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggaatattgctaaaaataaagaggatccctgtgaccagacagcatagctaggaagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttggaatattgctaaaaataaagaggatccctgtgaccagacagcatagctaggaagca 260

                                                                       
Query: 61  aatcatccaggcaaggttactgacagtgccaggagaggttcctcagaaacaaaggtacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcatccaggcaaggttactgacagtgccaggagaggttcctcagaaacaaaggtacat 320

                                                                       
Query: 121 gtaagatatgagagctttttcaagggtgaggtgaattttgtagatcttatcataaacaga 180
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 321 gtaagatatgagagctttttcaagggtgaggtgaattttatagatcttatcataaacaaa 380

                                                                       
Query: 181 aataaaggagcttctaaaaccattatgtaaaatttatttcagcaaagaaaaagttgatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataaaggagcttctaaaaccattatgtaaaatttatttcagcaaagaaaaagttgatat 440

                                                                       
Query: 241 tgcataactataatttcatgaggctcagccatagccacatgtccagtcacaatgaccaat 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcataactataaattcatgaggctcagccatagccacatgtccagtcacaatgaccaat 500

                                                                       
Query: 301 attcaagagcctgaagcttaagaaaataaaacaaacaaatgtctataccactctggaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attcaagagcctgaagcttaagaaaataaaacaaacaaatgtctataccactctggaagg 560

                                                  
Query: 361 ctggggttagataatgtgtgtgagtgtgtgtgtgtgtgt 399
           ||| ||||||| |||||||||||||||||||||||||||
Sbjct: 561 ctgaggttagagaatgtgtgtgagtgtgtgtgtgtgtgt 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)