Query= MSMg01no418_h22.b1 MSMg01no418_h22.b1 CHROMAT_FILE:
MSMg01no418_h22.b1 PHD_FILE: MSMg01no418_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:42 2005
(526 letters)
>mm_chr15_3982613_3983537
Length = 925
Score = 891 bits (461), Expect = 0.0
Identities = 518/563 (92%), Gaps = 41/563 (7%)
Strand = Plus / Plus
Query: 4 ggaattccaaagaaatgcactccaaggtgacctcacctttcaggctctctgcatgtagat 63
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 ggaattccaaagaaaagcagtccaaggtgacctcacctttcaggctctctgcatgtagat 223
Query: 64 gaactcttacttccttccttatgctggtgaggcctgggctcatctttccaagacagagat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gaactcttacttccttccttatgctggtgaggcctgggctcatctttccaagacagagat 283
Query: 124 aatgaccgtaaagttacacattataaaacagggttctcataaagatttgctgtgtgtaaa 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aatgaccgtaaagttacacattataaaacagggttctcataaagatttgctgtgtgtaat 343
Query: 184 tgacaaagtagaacaatagagcactttcagaagacatggaaggactgtgtgacaggaagc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tgacaaagtagaacaatagagcactttcagaagacatggaaggactgtgtgacaggaagc 403
Query: 244 caaaacccaggactagtcgctctgcttgttcttacagtttggatcattctgcctatgccg 303
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 404 caaaacccaggactagtcgctctgcttgtttttacagtttggatcattctgcctatgccg 463
Query: 304 ctgttcctctggggctggaattacaggcatggaccaccacatctatcggtctatcatgta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ctgttcctctggggctggaattacaggcatggaccaccacatctatcggtctatcatgta 523
Query: 364 ttttacttctgagaccctgactcactcactcactc------------------------- 398
|||||||||||||||||||||||||||||||||||
Sbjct: 524 ttttacttctgagaccctgactcactcactcactcactcactcactcactcactcactca 583
Query: 399 ---------------tgtctgtctgtcagtctctctcttgtgtatctgtgtgtttaaaac 443
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 cacactcactcactctgtctgtctgtcagtctctctcttgtgtatctgtgtgtttaaaac 643
Query: 444 agaaaaaaaaaatccttactagttcaggataggaagagaacatcctttgtggttaagccc 503
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 agaaaaaaaaa-tccttactagttcaggataggaagagaacatcctttgtggttaagccc 702
Query: 504 tttcaaagtccttgtctctccct 526
|||||||||||||||||||||||
Sbjct: 703 tttcaaagtccttgtctctccct 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 925
Length adjustment: 10
Effective length of query: 516
Effective length of database: 915
Effective search space: 472140
Effective search space used: 472140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_h22.g1 MSMg01no418_h22.g1 CHROMAT_FILE:
MSMg01no418_h22.g1 PHD_FILE: MSMg01no418_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:42 2005
(536 letters)
>mm_chr15_4112766_4113701
Length = 936
Score = 998 bits (516), Expect = 0.0
Identities = 531/536 (99%)
Strand = Plus / Minus
Query: 1 tgcttccaggaaaacaaagtgggagatgctacttcctcttcctaaatcaaatatagggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tgcttccaggaaaacaaagtgggagatgctacttcctcttcctaaatcaaatatagggct 677
Query: 61 ctaagggaaacaatgtgagctttggaagtcattccctccagaagcaacaaatggaatgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ctaagggaaacaatgtgagctttggaagtcattccctccagaagcaacaaatggaatgtc 617
Query: 121 ccactgcaaaccagtgatccacacacacaatgggctgcactagcaccagggtcccacagt 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ccactgcaaaccagtgatacacacacacaatgggctgcactagcaccagggtcccacagt 557
Query: 181 ttgtcggctgagatacatttctaagatactctacagaagagccaggaaacagttgcccaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ttgtcggctgagatacatttctaagatactctacagaagagccaggaaacagttgcccaa 497
Query: 241 ggtcctttgctttatgacactccattacagatcataatgagcatgttctagctcatttag 300
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ggtcctttgcaagaggacactccattacagatcataatgagcatgttctagctcatttag 437
Query: 301 cctccaccatgaagcatgatggcaggaagcagtcacctgtccagttggttatctagagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cctccaccatgaagcatgatggcaggaagcagtcacctgtccagttggttatctagagat 377
Query: 361 ctcagacatgctgggtgattcacaaaactatctccagaagattccatacgtagacatgtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ctcagacatgctgggtgattcacaaaactatctccagaagattccatacgtagacatgtc 317
Query: 421 ttacttacatggaagggacgtcaagtatgtcacaaagatatacctgcaaatatacccatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ttacttacatggaagggacgtcaagtatgtcacaaagatatacctgcaaatatacccatt 257
Query: 481 gttaggatttatgcttaacctgatacttgctattaatatggcctccaacatgcagg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gttaggatttatgcttaacctgatacttgctattaatatggcctccaacatgcagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
