BAC Information

Click to search

BAC

Clone NameMSMg01-418M07
Chromosome15 (Build37)
Map Location 70,371,112 - 70,371,606
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383050
Downstream geneLOC383051, 1700010C24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418M07.T7 (MSMg01no418_m07.b1)MSMg01-418M07.TJ (MSMg01no418_m07.g1)
ACCAG514026AG514027
length747773
length of high quality
(start - end)
532 (74 - 605)493 (113 - 605)
definitionCHROMAT_FILE: MSMg01no418_m07.b1 PHD_FILE: MSMg01no418_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:03 2005CHROMAT_FILE: MSMg01no418_m07.g1 PHD_FILE: MSMg01no418_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAGGCCCTCACCTAAACATGATAAAAGCAATCTACAGCAA
ACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCAC
TAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAAC
ATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAA
GGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATG
ATATGATAGTATATATAAGTGACCCCTTTTTATTCCACCAGAGAACTCCT
AAACCTGATAAACATCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAA
ACAAGTCAATGGCCTTTCTCTGTACAAAGAATAAACAGGCTGAGAAAGAA
ATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCT
TGGCGTGACTCTAACTAAGGAAGTGAAAGATCTATATGATAAAAACTTCA
AATCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTC
CCATGCTCATGGATTGGGAGGATCCACATTGTAAAAATGCCTATCTTTGC
CAAAGCAATCTATTGATTCCATGCCATCCCCATCAAAATTCAACTCCAAT
CTTCCACGAATTAGAAGGATGCATTTGTCAATTCTTCCGGAATAACN
TGGAGTACGGGAGAGNNNNNNNTTCGTCTAAATTCCCTATGATAXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCTGCTCCTCCCATACCATGCCTGCCTGAATGTTGATA
TGCTCCCACCTATATGATAATGGACTGAACCACTGAACCTGTAAGCCAGC
TGCTTATGTTATCTTTTATAAGAGTTGCCTTGGTCATGATGTCTGTTCAC
AGAAACAAAACACTCACTAAGACAACCGTTTTGTTTTCTGAAATACAGTG
AAAAGTATCTCAGATACACCCAGCCACCACTCTGTTTCTAAGTACCACCC
CCCCCAGTCCTATGATGATCAGAATCTCCAACAATTACTATCTTCTATAC
AGGGCATATGAACTCTTCATTTTTAACATGGGAGAAACTTCATCCTCATA
CACACACATATACATAAAAACGCATGCACGTCTTTAATACATAAGTTGGT
TTTGTTTCCATAGTGGTGCTCATGGCATGAAACTGAATAGCTATTAGACA
AAGCTGCCTTCTCCTACTTGATTCTATGTCTCTGAAATCCAAAACAAACA
AACACTGTAACAGGATGTGATCTGATAAACAGATAATGTATGATGGAGAG
TCTATATATGTGTAATGGCTAGACTCCTAACGACATGAAATCTGTACTCT
GTCTTATTTATAGCTCGTATTACTTTTTAACATGTCCCATTTTGTCGTGG
GAAAAAATGATTATTCCTTGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_m07.g1 MSMg01no418_m07.g1 CHROMAT_FILE:
MSMg01no418_m07.g1 PHD_FILE: MSMg01no418_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:03 2005
         (493 letters)



>mm_chr15_70370912_70371811
          Length = 900

 Score =  903 bits (467), Expect = 0.0
 Identities = 485/495 (97%), Gaps = 7/495 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgctcctcccataccatgcctgcctgaatgttgatatgctcccacctatatgataatg 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgctcctcccacaccatgcctgcctgaatgttgatatgctcccacctatatgataatg 260

                                                                       
Query: 61  gactgaaccactgaacctgtaagccagctgcttatgttatcttttataagagttgccttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactgaaccactgaacctgtaagccagctgcttatgttatcttttataagagttgccttg 320

                                                                       
Query: 121 gtcatgatgtctgttcacagaaacaaaacactcactaagacaaccgttttgttttctgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcatgatgtctgttcacagaaacaaaacactcactaagacaaccgttttgttttctgaa 380

                                                                       
Query: 181 atacagtgaaaagtatctcagata-------cacccagccaccactctgtttctaagtac 233
           ||||||||||||||||||||||||       |||||||||||||||||||||||||||||
Sbjct: 381 atacagtgaaaagtatctcagatatcagatacacccagccaccactctgtttctaagtac 440

                                                                       
Query: 234 caccccccccagtcctatgatgatcagaatctccaacaattactatcttctatacagggc 293
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccccccccccagtcctatgatgatcagaatctccaacaattactatcttctatacagggc 500

                                                                       
Query: 294 atatgaactcttcatttttaacatgggagaaacttcatcctcatacacacacatatacat 353
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatgacctcttcatttttaacatgggagaaacttcatcctcatacacacacatatacat 560

                                                                       
Query: 354 aaaaacgcatgcacgtctttaatacataagttggttttgtttccatagtggtgctcatgg 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaacgcatgcacgtctttaatacataagttggttttgtttccatagtggtgctcatgg 620

                                                                       
Query: 414 catgaaactgaatagctattagacaaagctgccttctcctacttgattctatgtctctga 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catgaaactgaatagctattagacaaagctgccttctcctacttgattctatgtctctga 680

                          
Query: 474 aatccaaaacaaaca 488
           |||||||||||||||
Sbjct: 681 aatccaaaacaaaca 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 900
Length adjustment: 10
Effective length of query: 483
Effective length of database: 890
Effective search space:   429870
Effective search space used:   429870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)