BAC Information

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BAC

Clone NameMSMg01-419A16
Chromosome15 (Build37)
Map Location 63,972,557 - 63,972,884
singlet/doubletsinglet
Overlap geneDdef1
Upstream geneEG239502, EG432959, LOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik
Downstream geneAdcy8, LOC268812
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419A16.T7 (MSMg01no419_a16.b1)MSMg01-419A16.TJ (MSMg01no419_a16.g1)
ACCAG514236AG514237
length775750
length of high quality
(start - end)
328 (124 - 451)485 (66 - 550)
definitionCHROMAT_FILE: MSMg01no419_a16.b1 PHD_FILE: MSMg01no419_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:25 2005CHROMAT_FILE: MSMg01no419_a16.g1 PHD_FILE: MSMg01no419_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTTCTAAATTGGGGGCGGTATAGGAGTCCTATATCGACAAGACCCGC
GGAATCCGGATTTTCTGCCCATAGACAGTGAGCCCGCGGCCTCTCCTCCC
TTGGTTAATACTCACTGGGCTCCAAGTATCTGCTGGACAGCTTCACATAA
GGGCTGTACCCGTTTACTCCACTAGCAATAATACTTGGGTGATATTTATC
CTACAGAATGGTCAGGCTGCGGTGTCAACACGAACCTCAAGTGACAGGGA
CACATCCTGCCTATACCACACATATTCTCCCCCAGGCTGAACTGCAATAG
GCGTAGCAAACAAAGCATCTGCTACCCAATGCTGAGCAGAGGGACATGAG
AAAAAGGCTTAGGGACGGACGGGCCTGGGGAATGTTCTACTCAAGTCCGA
AGAGCTTTAGCAGAAGCACAGAAATTAGCAATAATGGTAATTCTAGCTGT
TTGTTTAAGTTACGAAATTTCAAAACCACTCTTGACATTTAGACTACATT
ATAGGNATAGTGATGAAAGACGACAATCTTTCCCCAGATTAAATGAGAGC
CAAACTTANCAGTTTTGTCCCGGCTGCTTCCTGGGGGGGGCAGTCCCGGA
AAGTAAGAATGTTAAATTTGTCCCCTCCCCCCCTAAACCCCCCCAACTTT
TTTTTTCGGGGGTTAAAGACGCCGGGTTCTTGGAATCTAAAACTTCCCTC
CACTAAACGCCCCCCTCCATGGGTGTGTTCCCTTCTCAACAAGGGGGGGG
GTCGGGGTATTAAAATTAGCCCTGG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTACCCTTTCTTAGAAATGGGAACAAAACACCCA
TAGAAGGAGTTACAGAGACAAAATTTGGAGCTGTGACGAAAGGATGGACC
ATCTAGTGATTGCCATATGCAGGGATCCATCCCATAATCAGCTTTCAAAT
GCTGACACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCAGATA
TAGCTCTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGA
TGATCACAGTCTTCTATTGGATGGGTCACACGGCCCCTTATGGAGGAGCT
AGAGAAATTACCCAAGGAGCTATAGGGAACTGCAACCCTATAGGTGGAAC
AACAATATGAACTAACCAGTACCCGGGAGCTCTTGTCTTTAGCTGCATAT
GTATCAAAAGATGGCCTAGTCGGTCATCACTGCAAAGAGAGGCCCATTGG
ACTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAG
GGGTAGTGGGTGGGGTAGGGGNNTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNTTTTTNTTNTTT
TTTTTTTTTTTTTNTTTTNNNNTTTNTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTCCTNNTTTTTTTTTTNNTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_a16.b1 MSMg01no419_a16.b1 CHROMAT_FILE:
MSMg01no419_a16.b1 PHD_FILE: MSMg01no419_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:25 2005
         (328 letters)



>mm_chr15_63972357_63973084
          Length = 728

 Score =  603 bits (312), Expect = e-177
 Identities = 324/328 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtatctgctggacagcttcacataagggctgtacccgtttactccactagcaataata 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 aagtatctgctggacagcttcacataagggctgaacccgtttactccactagcaataata 260

                                                                       
Query: 61  cttgggtgatatttatcctacagaatggtcaggctgcggtgtcaacacgaacctcaagtg 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 cttgggtgatatttatcctacagaatggtcaggctgcggcgtcaacacgaacctcaagtg 320

                                                                       
Query: 121 acagggacacatcctgcctataccacacatattctcccccaggctgaactgcaataggcg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 acagggacacatcctgcctataccacacatattctcccccaggctgaactgcaataggtg 380

                                                                       
Query: 181 tagcaaacaaagcatctgctacccaatgctgagcagagggacatgagaaaaaggcttagg 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagcaaacaaagcagctgctacccaatgctgagcagagggacatgagaaaaaggcttagg 440

                                                                       
Query: 241 gacggacgggcctggggaatgttctactcaagtccgaagagctttagcagaagcacagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacggacgggcctggggaatgttctactcaagtccgaagagctttagcagaagcacagaa 500

                                       
Query: 301 attagcaataatggtaattctagctgtt 328
           ||||||||||||||||||||||||||||
Sbjct: 501 attagcaataatggtaattctagctgtt 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)