BAC Information

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BAC

Clone NameMSMg01-419H13
Chromosome15 (Build37)
Map Location 101,769,882 - 101,770,005
singlet/doubletsinglet
Overlap geneKrt79
Upstream geneScn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4
Downstream geneKrt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419H13.T7 (MSMg01no419_h13.b1)MSMg01-419H13.TJ (MSMg01no419_h13.g1)
ACCAG514565AG514566
length1,024729
length of high quality
(start - end)		---124 (119 - 242)
definitionCHROMAT_FILE: MSMg01no419_h13.b1 PHD_FILE: MSMg01no419_h13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:02 2005CHROMAT_FILE: MSMg01no419_h13.g1 PHD_FILE: MSMg01no419_h13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGCGCGAATTAACACGCTAGTCGGTCCGACGACCCGCTGCTTGTTACAC
ACTCTACAGCTCAGACGAAAGGTCCGAGTGCAACGCGGCTCTCATCAAAT
ACAGTTATAAATGGCGATTGTTATAGGCTGTGACATTGGCGGCCGGGAAG
ACGTAGCGGGATGACGCTATATCCTATAGATCTAGGAACCGCCGTAAGGC
GAGCTTTCGGTTGTAATGCCGTTCATTACGCGATTGGCGTGAAGTTACCC
ATTACTGGCACATCTACACAACACACGTTGACGTTGGTGTCACCCCCCCA
CAACTTACCGCTTGCCCGCTCGCTTTATCACCACCCATTGTACTCTATAT
TAATGCGGCGGTTTTCACCATCCGCTTATTCCGGTACGTCTTCCACTTCA
TAATGCGCGCGTACGCCGTCACCAACCCCTCGTTGGTTGATGGGCTCGTT
CTACTTTCCCATCCTAGATCCCATTTTCTGTTTATGCGTGCCCTAACGGA
ATCAGAGTTAGGGATAACCGAAGGTGACATGCGATATACGGACATATCCG
ATATAGGCGTACGTAGCGCGATGTTCGGAAATTAATTATATAAGGATCTC
TTAACCCTATCACCTTCCCACTTCTGCCTGCACGATATTATTTCACTTTT
GACATGCAAGCTAATCGGTGTGGAGTAGGTCAGCGATTCAACGTATATCA
ACGACTCAGAAACCGCCCACCGATAATTTTATCCTCCGCGCGTCCGTAGA
TAATCGAAACACATTATTTGTGTACGCTTATTAGCGATTACTTGTCGCTC
CGCGGTACCCCGTTAATTCGGTATTTGCGCATATATACACACCCGCTCGC
CACTCGCCGTTTATTTGTTTTCGTCTCCCCACCGTAATATATTGGTGTTT
AGACCATTGATCGCCGCAGACACCGAATATATTATATTTGGTGCTTATAT
CAAGCAGCGCGCAATCAGACTCATCGGACGATCCGTGATTTATATCCCGC
GCGTTCTTTCCCGACGCTTATTCG

CTGCGAGGCCTGGNGGNCGCCTGGTTGCCGACCCGTGGNNGAACNANAGA
AGGTAACANGACCCTGCGGAGNCANGCACNGNNGCCCACAGCNANAAAAG
GACNCAAGTCTTCACACGGCCAACTCCCTGACAGGAGCACTGGGGACCAC
ACATCTTTTAATAATGGGGTAAAGCTAATGCTTAGCGGTATAGGAAAGGC
TCCAACACAGGTGGGCTGGGCCTCTCATTCACAGAAGGAACCCCTTTCTT
CAGGTTTTAGCCCCAACCCCCGGTAGGCAGAAACCACCGTCTCTGTTCAT
CACCCCACCCTGTTTTTTTATAGCACANGGNAAAAACGGCCNNTGCCCAG
ACCGTCCCCCACCACAGGCNCAGCTTCCACCCCACTCCACCTCACCCCGG
TTTTGCCCACCCACCTTATCAATAAAGGAGGCAAACTTGTTGTTGAGGGT
CTTGATCTGCTCGCGCTCCTGGGTGCGCACCCGCTGAATCTCGGGGTCTA
TCTCCACATTGAGAGGCGTCAGCAGGCTCTGGTTGACAGTGACTTCCTGG
ATGCCCCCGGGAGGACAGACTGGTCCAAATGTCCGCCTGCTAGTCCCTAG
GTCCACATAGGCCCCACTGTCTAAGCCTCCTAGCGCCCGGCCATATTATT
TTTTTTTTGCCATGCTGACGGAGACATTCCCGCCTCCCTAGCTGTACAGG
CTCCGGCTGTCAAACCCCCCGGAACTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_h13.g1 MSMg01no419_h13.g1 CHROMAT_FILE:
MSMg01no419_h13.g1 PHD_FILE: MSMg01no419_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:02 2005
         (124 letters)



>mm_chr15_101769682_101770205
          Length = 524

 Score =  217 bits (112), Expect = 2e-61
 Identities = 121/124 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccaactccctgacaggagcactggggaccacacatcttttaataatggggtaaagctaa 60
           |||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 201 gccaactccctgacaggaacactgaggaccacacatcttttaataatggggtaaggctaa 260

                                                                       
Query: 61  tgcttagcggtataggaaaggctccaacacaggtgggctgggcctctcattcacagaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcttagcggtataggaaaggctccaacacaggtgggctgggcctctcattcacagaagg 320

               
Query: 121 aacc 124
           ||||
Sbjct: 321 aacc 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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