BAC Information

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BAC

Clone NameMSMg01-419I18
Chromosome15 (Build37)
Map Location 75,063,058 - 75,063,524
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040984, Bai1, 1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446
Downstream geneLOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1, LOC671535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419I18.T7 (MSMg01no419_i18.b1)MSMg01-419I18.TJ (MSMg01no419_i18.g1)
ACCAG514623AG514624
length1,023768
length of high quality
(start - end)		---577 (64 - 640)
definitionCHROMAT_FILE: MSMg01no419_i18.b1 PHD_FILE: MSMg01no419_i18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:07 2005CHROMAT_FILE: MSMg01no419_i18.g1 PHD_FILE: MSMg01no419_i18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:08 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GGCGATTTATAAACTATTAACGCGATCGCGTACGTGCTTGCTCGATCATA
ACAGCCAGCCGCGGCAGTGGCGGTTGTAATTGTCACTATCCCCGCATATG
AGCACACGCGCACAAGACGTGTTCGCCGTTTACACCCTTATCCCCACCCC
CTTTAAATCACCCTTCACACATCAATTGCCCCGATCAAACAACCCTCACC
CTACACCCAATTTTCCCGGTGCATTGCCGCCTATAACGGGGCCGCGCGGC
TGCGCACGCGACGCAAATTATATGATTATGCGCAAGAACACAGCGGTATA
AATAGATGTAATAAAGACAGGCAAAGCGGGGAAGCAGCGTGAACACCCTA
TTTCTTTGGCCTGGCCACAGAGCATCGTGTCTAAGGGCGCTGTGTTGGGT
CACGCCACGCCCAAAGGGGCGGCGGTAGTGCGTTTTACGCCATAATTAGA
ACAATCGGCGAGTTACCTAGACAACTGTTTTGTGCTACCCGAGAACCCCC
ACGCCGTCTTTTACGACTTAAAGCGCGCCCGTAGCGCTATCTATCTATAC
CCCCCCCATAATTACCATATGCCGATTAACGCTGCCATGATTTTCCCCCA
TATATTTCTCTCGCTATTTTTCCCCCCCCCGTTTATTCGACTTTCCCCGC
GCACCTACATATTTTTTATACAACTTTAACGCAGCCATTTGCCGACAATT
TTTGCTTAGAACTATTATACGAGGCGCCTGTGCGGGTATATACACCGTTG
TACACAATTGTAACAAAAACATCCCCCTTGGGATGTGCGAAGAGACTCCC
AGGATAGATAGGTGTAGCGATAAGCTTATATCTAAACGATGGCCGACCCG
CTACTGGTTTTAGACCCGCATTAACCGCCCCCGCGTCCCTCTACTGTTTT
TTCCTCGCCAGTATTTTGTTTATTTATTTTTATCCCCCGAAATCTGCTAG
TCCCCTGCCGCCGATAATAATCCGCCAGACATCAAGATATAACCGCTAGT
CGAAGGTGAAGATGCCCCCGATN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCAGAAATTCCAGGGCTGGACGTAGATCATGTAGATCACAGCCTGTG
CTTTTTACCTGTCTGATGAGCCAGTCTTTGCCTGTATCTTCAAGAGTTAA
TGTTTTCTTATCCCAGACCACTTCCCTTTAAAACCTTGACCACTGCTAAT
AGCTTATACAATTTGCCCTTGTGAGAAATGTCATTTGTATTTGACAGCAG
CCTAAGTGACTAGGAAATCTTTGAAACAGGCCACCCCTGATACCCACAGG
CATTACATTTATCTCATTCCAATCATACTTCCTAGACCTTTGCATTGAGC
ATTGTTTCAAAGTCAACAAGAAACCATCTTATGGATGAAGCTATATGTAA
AGATCTTCAGTGTAAACATTAAGCTCTGCTGTACTCATGGGGCTGGATGA
TTTTTATCTGAATACATCTCCTAAATGTGGGCTGTGCTCAATTAAATATG
GCTAATATAAAATGATCTGGGTCAGACTCTACAAGTCTTAGCCCAGCACT
AGTACTAAAATCAGGCTCATCGGAGTTTTATTTGTAACTCTTCCTTATTT
TTCCCCTGCCTACTCTAAAGTCTACACACACACACACACACTCACACTTT
TTTTTTTTTTTTTTTTACACCNACCTTAGTGGAAGGAGATTTATATAATA
GGATTCAACCTCAAGGCCATTCTTCTTTATCAATGTGTAGGAAATAATCC
ACATTTTTTTTTATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_i18.g1 MSMg01no419_i18.g1 CHROMAT_FILE:
MSMg01no419_i18.g1 PHD_FILE: MSMg01no419_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:08 2005
         (577 letters)



>mm_chr15_75063058_75064034
          Length = 977

 Score =  880 bits (455), Expect = 0.0
 Identities = 464/467 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggctggacgtagatcatgtagatcacagcctgtgctttttacctgtctgatgagccagtc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ggctggacgtagatcatgtagatcacagcctgtgctttttacctgtctgatgagccagtc 408

                                                                       
Query: 64  tttgcctgtatcttcaagagttaatgttttcttatcccagaccacttccctttaaaacct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tttgcctgtatcttcaagagttaatgttttcttatcccagaccacttccctttaaaacct 348

                                                                       
Query: 124 tgaccactgctaatagcttatacaatttgcccttgtgagaaatgtcatttgtatttgaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tgaccactgctaatagcttatacaatttgcccttgtgagaaatgtcatttgtatttgaca 288

                                                                       
Query: 184 gcagcctaagtgactaggaaatctttgaaacaggccacccctgatacccacaggcattac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gcagcctaagtgactaggaaatctttgaaacaggccacccctgatacccacaggcattac 228

                                                                       
Query: 244 atttatctcattccaatcatacttcctagacctttgcattgagcattgtttcaaagtcaa 303
           ||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 atttacctcaggccaatcatacttcctagacctttgcattgagcattgtttcaaagtcaa 168

                                                                       
Query: 304 caagaaaccatcttatggatgaagctatatgtaaagatcttcagtgtaaacattaagctc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 caagaaaccatcttatggatgaagctatatgtaaagatcttcagtgtaaacattaagctc 108

                                                                       
Query: 364 tgctgtactcatggggctggatgatttttatctgaatacatctcctaaatgtgggctgtg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 tgctgtactcatggggctggatgatttttatctgaatacatctcctaaatgtgggctgtg 48

                                                          
Query: 424 ctcaattaaatatggctaatataaaatgatctgggtcagactctaca 470
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47  ctcaattaaatatggctaatataaaatgatctgggtcagactctaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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