Query= MSMg01no420_a04.b1 MSMg01no420_a04.b1 CHROMAT_FILE:
MSMg01no420_a04.b1 PHD_FILE: MSMg01no420_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:43 2005
(523 letters)
>mm_chr15_66455194_66456116
Length = 923
Score = 551 bits (285), Expect = e-161
Identities = 333/373 (89%), Gaps = 38/373 (10%)
Strand = Plus / Minus
Query: 151 ggtttcagtttcagtaaagttcactgtctcaaaaaagaataacagaactgtagacgaaga 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 ggtttcagtttcagtaaagttcactgtctcaaaaaagaataacagaactgtagacgaaga 864
Query: 211 caccaagttgacctctgccctccacacatgcgtggacatatgtatacatacataccacag 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 caccaagttgacctctgccctccacacatgcgtggacatatgtatacatacataccacag 804
Query: 271 aaagattagaaaaaaagaccatgactcactctctctctctctctctctctctctctctct 330
||||| |||||||||||||||| |||||||
Sbjct: 803 aaagaaaagaaaaaaagaccatg------------------------------tctctct 774
Query: 331 ctctctctctctctctctctctctctctccatacatacatacatacatacatacacacgc 390
||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 773 ctctctctctctctctctctctctctctc--------catacatacatacatacacacgc 722
Query: 391 atacacagtagggggaaatctccatcatgttaaaggatttgtgtcatagtacttacttca 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 atacacagtagggggaaatctccatcatgttaaaggatttgtgtcatagtacttacttca 662
Query: 451 ccatatgttggagataaagtcattgcaatttattttacagagcagattttatgtttttga 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ccatatgttggagataaagtcattgcaatttattttacagagcagattttatgtttttga 602
Query: 511 aatgataagacaa 523
|||||||||||||
Sbjct: 601 aatgataagacaa 589
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 23
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no420_a04.g1 MSMg01no420_a04.g1 CHROMAT_FILE:
MSMg01no420_a04.g1 PHD_FILE: MSMg01no420_a04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:43 2005
(558 letters)
>mm_chr15_66308596_66309555
Length = 960
Score = 824 bits (426), Expect = 0.0
Identities = 530/572 (92%), Gaps = 15/572 (2%)
Strand = Plus / Plus
Query: 1 tttatctgggaaacttcaaaata--tttttttaacaagtaaacaaaaactaaggtttttg 58
||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||
Sbjct: 201 tttatctgggaaacttcaaaatatttttttttaacaagtaaacaaaaactgatgtttttg 260
Query: 59 ccaacagaagatctaccatacagaaatacattaaatggcatctttgaggttgaaaagaag 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ccaacagaagatctaccatacagaaatacattaaatggcatctttgaggttgaaatgaag 320
Query: 119 acatgaaatgaagatatgaagatattagaatcaacgtatcagctgttgtgggtagggctt 178
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 acatgaaatgaagatatgaagatattagaatcaatgtatcagctgttgtgggtagggctt 380
Query: 179 ttgcagtcacagtggtaaactccagggctataagccactgggtggctattcaagtgtcat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgcagtcacagtggtaaactccagggctataagccactgggtggctattcaagtgtcat 440
Query: 239 tcaagatactctgttctaacacacagcctgttaccatacagggttggcagttgagaagcg 298
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaagatactctgtcctaacacacagcctgttaccatacagggttggcagttgagaagcg 500
Query: 299 tggacagggcataccaggcagtgtggaccagcagtgcagagcagaagagtcgactagcag 358
||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct: 501 tggacagggcataccaggcagtgtggaccagcagtgcagagcaccagagttgaccagcag 560
Query: 359 tgtagactagcagtgcagagcagcagtgtggacaagcagtttgggccatcagtgtggacc 418
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 561 tgtagactagcagtgcagagcagcagtgtggacaagcagtgtgggccagcagtgtggacc 620
Query: 419 accagtatagaccagcagtgtaaactagcagtgcagagcagcagtgtggaccagcagtgt 478
||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct: 621 accagtatagaccagcagtgtggaccagcagtgcagagcagcagtgtggaccagctgtgt 680
Query: 479 ggaccagcagt---------t--t--agaccagcagtgtaaactagcagtgcagagcagc 525
||||||||| | | ||| ||||| || | || ||||||||||| ||||
Sbjct: 681 aaaccagcagtgcggaccagtagtgcagagcagcaatgcagaccagcagtgcagaccagc 740
Query: 526 agtgtggaccagcagcgcggaccagctgtgta 557
||||||||||||||| || || |||| |||||
Sbjct: 741 agtgtggaccagcagtgcagagcagcagtgta 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 960
Length adjustment: 10
Effective length of query: 548
Effective length of database: 950
Effective search space: 520600
Effective search space used: 520600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
