BAC Information

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BAC

Clone NameMSMg01-420M06
Chromosome15 (Build37)
Map Location 101,417,800 - 101,417,986
singlet/doubletsinglet
Overlap geneEG432985
Upstream geneDazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75
Downstream geneEG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420M06.T7 (MSMg01no420_m06.b1)MSMg01-420M06.TJ (MSMg01no420_m06.g1)
ACCAG515552AG515553
length702732
length of high quality
(start - end)
---187 (116 - 302)
definitionCHROMAT_FILE: MSMg01no420_m06.b1 PHD_FILE: MSMg01no420_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:43 2005CHROMAT_FILE: MSMg01no420_m06.g1 PHD_FILE: MSMg01no420_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:43 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GAGAGCAAATTTGTGGGGGGTAGGAGAGGATTTCAAAGAGGGGNGNGGAN
TTTTTTTCCAACAATAGAGAGGAGAGGGCTAAAANCAATATAGACGTGGA
TATTCTCCCCCGCTGGAGATCTCTCGAGAAGAGAGACCGCTCCCAGCAGA
AAAGATTACCCGAGAGGCCACGCTGGTGACCACACGAGAAGCTCCCCAGC
TGAGAGAGAGCTTTGATGACGCCGCCGGATGATATATGCTGCCAAAAAAA
AGCGCCCACACAGCGCTCATGTGGGCTCAAAGAGACAGTGGCTCACATTT
TTATCTTGTCGTGGCCCCTATTTAGTGCTGGACAGGTGTGTTTCTTAACA
TAACCCACGTGGCATCTCCGTGGACCTTCGTTTTGTGACCTATATAGATG
TGAGAGGACAGAGCCATCTCATTTCATAACATCCCATTCCTCAAGAACAC
CAGGTGACCGGAAAGGGCTCCCTTTAAGGCAAAGCCGAGAGGTTTGGAGT
ACCTCTCCACCCCCATCCCCCTTATGAGGAAAACCTTCACCCGGTGCCTG
GCTGCCAAAAATCAAGAAGGAACCCGGAAACTTGAAGCTGAAAGATGGCT
GAACGTAAAAACTCTTGTGGTCCCCAACTACTTAGCCTGATTAACTCCCA
ACTTACATCACCGTTACAGTGCTCAGGCCTACATATTCCCCCTTCTTATT
TT
CAGTGGGAGGCCTGGNGGNCGCCTGTTTTCAAACTGGGGNGAACTATANA
AGTTAACAAAACAGTCTTGACTGNAGCTCTTCCTGCTGGAAGAGGTAGTG
GTGTATTTTATGCCAGAAGGACTTCCACCAGAAGTTCTGAGGCCACCTCC
GATGGCTCTGCCACTGCCAGCACTGAAGCCACCTTCAAGGCCATGGCTAC
TGCCATAGGAGTAGCTGCTGCCTCCACCCAGGCTTAAGCTGCTTTTGACA
CCACCTGCACTGCCATAGCCGCTGGACACAGTGGACTGCACCACAGCTGT
GAAGGATTTTAATGAATAATACACCAGAGACACGGNGAGCACACTATAAT
CATCTGACCCACTCATAAGGGCAGAAGAAAGGGAGGCTGGCAAGCAGATT
GCTTTCACATGTTGACTGGTCCAACACCTTCACCATGTAACCTAATAGAG
GAAAGCATCAGGTGATAACTAGGCAGCCATGTCTTCAGTCTCCAGGGGAA
CCCTCAATCTGGTGAAGGTTCACAGAGAATCTTTGCCAAGGAGCCGCTTG
AAGGCACCATTGTGTCCACAGCCTAGTGTTCCCCCACCTTCTGCTCAGTA
CCCGACTTTGAGAGGTATGTGAATGTCATTCTTTGCTAACGAAAATCTGT
ATTTTTTTTTTTAGCCCCCCCCTGCGGTGGTGATTTTTCCAACAAATCTT
TGACCTGCCCGTACTCACTCTTCTCTCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_m06.g1 MSMg01no420_m06.g1 CHROMAT_FILE:
MSMg01no420_m06.g1 PHD_FILE: MSMg01no420_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:43 2005
         (187 letters)



>mm_chr15_101417600_101418186
          Length = 587

 Score =  323 bits (167), Expect = 4e-93
 Identities = 182/187 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaggacttccaccagaagttctgaggccacctccgatggctctgccactgccagcactg 60
           |||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 201 gaaggactgccaccagaagttctgaggccacctctgatgactctgccactgccagcactg 260

                                                                       
Query: 61  aagccaccttcaaggccatggctactgccataggagtagctgctgcctccacccaggctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagccaccttcaaggccatggctactgccataggagtagctgctgcctccacccaggctt 320

                                                                       
Query: 121 aagctgcttttgacaccacctgcactgccatagccgctggacacagtggactgcaccaca 180
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagctgctgctgacaccacctgcactgccatagccgctggacacagtggactgcaccaca 380

                  
Query: 181 gctgtga 187
           |||||||
Sbjct: 381 gctgtga 387


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)