BAC Information

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BAC

Clone NameMSMg01-421E06
Chromosome15 (Build37)
Map Location 45,538,639 - 45,539,062
singlet/doubletsinglet
Overlap genenone
Upstream gene5730410E15Rik, A930017M01Rik, EG432950, Kcnv1
Downstream geneLOC100039389, EG432951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421E06.T7 (MSMg01no421_e06.b1)MSMg01-421E06.TJ (MSMg01no421_e06.g1)
ACCAG515933AG515934
length756768
length of high quality
(start - end)
516 (73 - 588)536 (71 - 606)
definitionCHROMAT_FILE: MSMg01no421_e06.b1 PHD_FILE: MSMg01no421_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:23 2005CHROMAT_FILE: MSMg01no421_e06.g1 PHD_FILE: MSMg01no421_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGG
AATTCCATGAGGAATATCTCAACTCTTATGTTTGTCGGAGTAGAAAAATC
AAATACCTTGGGTATCCTAGGTTTTGGGCTAATATCCACTTATCAGCGAG
TACATATTGTGTGAGTTCCTTTGTGATTGGGTTACCTCACTCAGGATGAT
GCCCTCCAGGTCCATCCATTTGGCTAGGAATTTCATAAATTCATTCTTTT
TAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTATC
CATTCCTCTGTTGAGGGGCATCTGTTTTCTTTCCAGCTTCTGGCTATTAT
AAATAAGGCTGCTATGAACATAGTGGGGCATCAAGAAAAATGAAGACTGA
AGTGTGGACACTATGCCCCTCCTTAGAAGTGGGAACAAAACACCCATGGA
AGGAGTTACAGAGACAAAGTTTGGAGCTGAGACGAAAGGATGGACCATGT
AGAGACTGCCATATCCAGGGATCCACCCCATAATCAGCTTCCAAACGCTG
ACACCATTGCATACACTAGCAAGATTTTATCGAAAGGACCCAGATGTAGC
TGTCTCTTATGAGACTATTCCGGGGCCTAGCAAACACAGAAGTTGATACT
CACAGNCTGCTAATGGATGGATCATAGGGCTCCCAATGGAGGAGCTAGAG
AAAGAATCCCAGAGCTTAAGGGATCTGCCAACCCTGTAGTGGAAAATCTT
TTGAAN
GGTAGGGGGAGCCGGGGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTTTGGTTTATGTATATTGCTATCTCACG
GTCTCATTTAAGTTAATAGCATCAAATAATATTAATATCTTAAGACACTT
CCATTTTGTAAATCTGAACTTGTGTTTAAGTCCCTGAGTTATTGTTTTAA
GGTATATAATATTAGGTGATAAAAAATGTTTAGAATTGATGACATGTGTT
TTATATGGCAAGAATATTTCATATTTTAGAGAGATTAAAATCTTTACTGT
TGGGAGCTATTAAGACAACTCTATTGTCTTGATCTCTGAATTGGGCCTCT
CCCCCCAAGAAGAAAGGGGGGTCAAAAGCGGGCCACCGACGCACCATTCC
AAGAACAACCACAATATGTTCTGGCCCTAAGTCAGCGCCAGATGTCCTGA
CCATAAGATGTACCCTGATATCACCAAGTTCCTGCTTCCACGTGTAGTTG
CCAAAAGAAAAATTTCCCTGCCCCATCCCTCCTGCTGAGAAGTATTTCCT
CTTTTGCTTGTGCATCCCTCCTGCTGAAAGTACTTCCTCTTTTGCTTGTG
CATTTAAGCCTTGAGCCTTGCTGAATACAGTGACACCTTGATGCTACTCA
GACTGCTTCCGCCATGTCGTTCCTGCACTTGGTGTCCATCTCTCTCTCTC
TCCCCATTTGGTTCTTTAGAGAAGGTCCCCTCGAGAACCTTCAATAATTG
GACCTGCTGGACGTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_e06.g1 MSMg01no421_e06.g1 CHROMAT_FILE:
MSMg01no421_e06.g1 PHD_FILE: MSMg01no421_e06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:23 2005
         (536 letters)



>mm_chr15_45538636_45539571
          Length = 936

 Score =  775 bits (401), Expect = 0.0
 Identities = 419/425 (98%), Gaps = 2/425 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttggtttatgtatattgctatctcacggtctcatttaagttaatagcatcaaataat 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 427 actttggtttatgtatattgctatctcacggtctcatttaagttaataacatcaaataat 368

                                                                       
Query: 61  attaatatcttaagacacttcca-ttttgtaaatctgaacttgtgtttaagtccctgagt 119
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 367 attaatatcttaagacacttccatttttgtaaatctgaacttgtgtttaagtccctgagt 308

                                                                       
Query: 120 tattgttttaaggtatataatattaggtgataaaaaatgtttagaattgatgacatgtgt 179
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 307 tattgttttaaggtatataatattaggtgat-aaaaatgtttagaattgatgacatgtgt 249

                                                                       
Query: 180 tttatatggcaagaatatttcatattttagagagattaaaatctttactgttgggagcta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttatatggcaagaatatttcatattttagagagattaaaatctttactgttgggagcta 189

                                                                       
Query: 240 ttaagacaactctattgtcttgatctctgaattgggcctctccccccaagaagaaagggg 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 188 ttaagacaactctattgtcttgatctctgaattgggcctctccccccaagaagaaaaggg 129

                                                                       
Query: 300 ggtcaaaagcgggccaccgacgcaccattccaagaacaaccacaatatgttctggcccta 359
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggtcaaaagcgggccactgacgcaccattccaagaacaaccacaatatgttctggcccta 69

                                                                       
Query: 360 agtcagcgccagatgtcctgaccataagatgtaccctgatatcaccaagttcctgcttcc 419
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 68  agtcagcgccagatgtcctgaccacaagatgtaccctgatatcaccaagttcctgcttcc 9

                
Query: 420 acgtg 424
           |||||
Sbjct: 8   acgtg 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)