Query= MSMg01no421_k19.b1 MSMg01no421_k19.b1 CHROMAT_FILE:
MSMg01no421_k19.b1 PHD_FILE: MSMg01no421_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:56 2005
(631 letters)
>mm_chr15_10211411_10212441
Length = 1031
Score = 1197 bits (619), Expect = 0.0
Identities = 625/627 (99%)
Strand = Plus / Minus
Query: 5 gaattccctcagtctctgctccatctttgtccctgcacttcttataggcaggataaattt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 gaattccctcagtctctgctccatctttgtccctgcacttcttataggcaggataaattt 857
Query: 65 tgggcccaaggttttgtgggtgggttatcctaatcccttcactgggagttctacctggct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 tgggcccaaggttttgtgggtgggttatcctaatcccttcactgggagttctacctggct 797
Query: 125 agaggaagaggcaacttcaggctccatatcctccactgctaggagtttcactagattatg 184
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 796 agaggaagaggcaacttcaggctccataccctccactgctaggagtttcactagattatg 737
Query: 185 atgggaatttctttggaaaccaaagttgagaacacaggtagactatcacactgctactca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 atgggaatttctttggaaaccaaagttgagaacacaggtagactatcacactgctactca 677
Query: 245 agaaagtcttaccagcctgtgttttatcagaggtaccctggcatttttgagcaatgtttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 agaaagtcttaccagcctgtgttttatcagaggtaccctggcatttttgagcaatgtttc 617
Query: 305 ccacatgctagctttaccaggagcatctagaaaggttggtattttcaaagggtagtgact 364
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 616 ccacatgctagctttaccaggagcatctagaaaggttggtattctcaaagggtagtgact 557
Query: 365 ctaatggagggatgtatgtgctctgtaacagggaaataccaaaagggttatatgttttct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctaatggagggatgtatgtgctctgtaacagggaaataccaaaagggttatatgttttct 497
Query: 425 tattgtcataacctatttacagttctggtattggttattacagacatattggaagcgagt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tattgtcataacctatttacagttctggtattggttattacagacatattggaagcgagt 437
Query: 485 tactttaaatatttttgagaatgatataaaataaatagagagtactactgatgatataaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tactttaaatatttttgagaatgatataaaataaatagagagtactactgatgatataaa 377
Query: 545 acaaacaaacaaacaaacaaaacagggagccttgattgaccaacatggaatattacaatt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 acaaacaaacaaacaaacaaaacagggagccttgattgaccaacatggaatattacaatt 317
Query: 605 cagagttggattttgtaagcaagaaag 631
|||||||||||||||||||||||||||
Sbjct: 316 cagagttggattttgtaagcaagaaag 290
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_k19.g1 MSMg01no421_k19.g1 CHROMAT_FILE:
MSMg01no421_k19.g1 PHD_FILE: MSMg01no421_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:56 2005
(524 letters)
>mm_chr15_10070459_10071385
Length = 927
Score = 934 bits (483), Expect = 0.0
Identities = 515/527 (97%), Gaps = 3/527 (0%)
Strand = Plus / Plus
Query: 1 ccagaggctcactgccttcaggtactttatttagtgccccgggactcgggaaactctctt 60
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 201 ccagaggctcactgccttcaggtactttatttagtgccctgggactcaggaaactctctt 260
Query: 61 agagctcgaatatttaggagacatctacatcaagtgctaccttttcattgctaacgttct 120
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 261 agagctcgaatatttaggagacatctacttcaagtgctaccttttcactgctaacgttct 320
Query: 121 agttgggcgctcgcctctcatcttctgtgggtttatta---acagaagaaagatagctcc 177
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 agttgggcgctcgcctctcatcttctgtgggtttattattaacagaagaaagatagctcc 380
Query: 178 taaatctcagatgcctgtcctggtttcggtcctgagaagtctcccagtgttcctgataag 237
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 taaatctcagatgcctgtcctggtttcggtcttgagaagtctcccagtgttcctgataag 440
Query: 238 atgtttatatgcacataataggcactcagagttaccatcttgggtaccttgtaagcttta 297
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtttatatgcacataaaaggcactcagagttaccatcttgggtaccttgtaagcttta 500
Query: 298 aggttaatggacaggaaaataacgccaactggaaattacaatctgggtaagaagagtaaa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggttaatggacaggaaaataacgccaactggaaattacaatctgggtaagaagagtaaa 560
Query: 358 ggatgtcccatgctatgacttttcaccacacaatttacttctttaactggtcagccgtga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 ggatgtcccatgctatgacttttcaccacacaatttacttctttaactggtcagctgtga 620
Query: 418 gccaaaatgatatgctgtcaatctgttggccacttctctgtgtctgtgagaaaatatttg 477
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccaaaatgatacgctgtcaatctgttggccacttctctgtgtctgtgagaaaatatttg 680
Query: 478 aggaattgaacttgagagaagattgatttccactcacgtttttagaa 524
|||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 aggaattgaacttgagagaagattgatttccactcaagtttttagaa 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 927
Length adjustment: 10
Effective length of query: 514
Effective length of database: 917
Effective search space: 471338
Effective search space used: 471338
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
