CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGG
AATTCAGTAAGGCTTGCTTCCCCATCATCTCCTACTAATACCATCTTTAC
TTCTGTTTCTAGGTCTCAATATTTATTTACTACATTACAGTGATGCTGGA
GGCCTGCTCTTGATTAGGGAAAACACAGGTGTGAATTGGGACAAAGCTTT
AGACAAAGGCCAAATACTGATGATGTCCAGTCTTTTAACTCTCTAACTAT
ACTGGAAGGTAGAAGCTGATGGCTTCTGGAGACTTAACACACTGTTGCTT
ATTCTGTGGCTGCCCCTCCCCTTGGTATTAACACCTGCATCTTAATAGCA
GGGGTCTGAGAGGATTAAGTAAAGAAGTTTTTATTCTCTTTCGGGTCCTG
GCCCAGGCAGGAGTGAGGCAAGGAGTTCCCTAAATTTTTGTCTGATAAAG
ACAGCTTCAGAAAGTCAACTTGCAGAAACAGGCACTCACTTTTAAAAGAG
GATGAATCCTTATTTCTGAGGGGAAAAAAAGGAAAACTGCTTTCTATCCC
TAAATAAAAGAAGACTTGTGCTAAAAAGAACCTGTCCCTGTCTGTTCTCC
TTATTCTTAACTTTTATATTTTCTCANGATACATGGTCACATGGTATTGC
AAGCATCTAGTTTTTAAAAGTTTCATGATAAATTCAAAACAAAAATTTAA
ATTATAAATTGAATAAGTAGTCCCAGGAGAAATGTTTACTATATTTCCAT
AGAGACTATGTAAATAAACCCCAACTGGCCCCAG

NTTTTTTTTNNTTTTTTTTTTTTTTNNTTTCCTCCCNNCTTNNNNNNNNN
NNNNNNNNNNNGGTCCAANNNTCAATGAAXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGATTCCCCGCGGAAAT
TCCTTTAACCTTCAAATTTTCCTTTAAAAATTAACCCTTTAAAAGGTTTA
AAAAAAAATTTTAAAAAAAAAAATTTTTTCCCCCCTTTTTTTTTAAAAAA
AATCCCCCCCCCCCTTTAAAAAAAAAAANAAAAANNNAAAAATTTTTTCC
CCCCCCGGCGGGAAAAAAAAAATATTTTTTTTTTTTTTNTGNNNNAAAAA
TGGCTTTAAAAATGGGGGAAAAAACAGGGCTATGGAAAAGGTTTTTTAAT
TTTAAACAGGCCCAAAGGGAAAAACCCCCCCAAAAGGGGGTCCCCCCGGG
GGAAAAAAACCATTTTTCCCCGGGGAAAAAAATTTTTTGCCCCCTTTTTA
AAAAAAAAATGTGTTGGAAAAAAAAGAGGGG

Query= MSMg01no421_n12.b1 MSMg01no421_n12.b1 CHROMAT_FILE:
MSMg01no421_n12.b1 PHD_FILE: MSMg01no421_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:09 2005
         (539 letters)



>mm_chr15_5940664_5941602
          Length = 939

 Score =  603 bits (312), Expect = e-177
 Identities = 332/342 (97%), Gaps = 6/342 (1%)
 Strand = Plus / Minus

                                                                       
Query: 204 tatactggaaggtagaagctgatggcttctggagacttaacacactgttgcttattctgt 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 tatactggaaggtagaagctgatggcttctggagacttaacacactgttgcttattctgt 880

                                                                       
Query: 264 ggctgcccctccccttggtattaacacctgcatcttaatagcaggggtctgagaggatta 323
           |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 879 ggctgcccctccccttgggattaacacctgcagcttaatagcaggggtctgagaggatta 820

                                                                       
Query: 324 agtaaagaagtttttatt------ctctttcgggtcctggcccaggcaggagtgaggcaa 377
           ||||||||||||||||||      ||||||| ||||||||||||||||||||||||||||
Sbjct: 819 agtaaagaagtttttattcttttcctctttcaggtcctggcccaggcaggagtgaggcaa 760

                                                                       
Query: 378 ggagttccctaaatttttgtctgataaagacagcttcagaaagtcaacttgcagaaacag 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 ggagttccctaaatttttgtctgataaagacagcttcagaaagtcaacttgcagaaacag 700

                                                                       
Query: 438 gcactcacttttaaaagaggatgaatccttatttctgaggggaaaaaaaggaaaactgct 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gcactcacttttaaaagaggatgaatccttatttctgaggggaaaaaaaggaaaactgct 640

                                                     
Query: 498 ttctatccctaaataaaagaagacttgtgctaaaaagaacct 539
           ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 639 ttctatccctaaataaaagaagacttgtgctaagaagaacct 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)