Query= MSMg01no422_n15.b1 MSMg01no422_n15.b1 CHROMAT_FILE:
MSMg01no422_n15.b1 PHD_FILE: MSMg01no422_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:23 2005
(541 letters)
>mm_chr15_52992930_52993870
Length = 941
Score = 880 bits (455), Expect = 0.0
Identities = 517/551 (93%), Gaps = 26/551 (4%)
Strand = Plus / Plus
Query: 1 cagagttctcctaaaatgaaaatgagagctgggtatgatagcccacacctttaatcctag 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 207 cagagttctcctaaaatgaaaatgagagctgggtgtgatagcccacacctttaatcctag 266
Query: 61 cacttgggaggcagagacaggtggtttaaggctagcctggtctacacaatgagttttagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cacttgggaggcagagacaggtggtttaaggctagcctggtctacacaatgagttttagg 326
Query: 121 acagccaaggctacacagagagtccctgttaaaaaaa----caaaacaaacggagctaga 176
||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct: 327 acagccaaggctacacagaaattccctgttaaaaaaaaaaacaaaacaaacggagctaga 386
Query: 177 gagatggctcagtggttaaaagcactggcttttcttctagaggtctt-a----agttcca 231
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 387 gagatggctcagtggttaaaagcactggcttttcttctagaggtcttgagttcagttcca 446
Query: 232 gaaactacatggtggctcacaagcttctatgatgtgatctgctgccttcttttggtatgc 291
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 447 gaaactacatggtggctcacaagcatctatgatgtgatctgctgccttcttttggtatgc 506
Query: 292 aggtatacatgtagacagagcattta-aaaaaaaaaagcataaataaataaaatccaaag 350
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 507 aggtatacatgtagacagagcatttttaaaaaaaaaagcataaataaataaaatccaaag 566
Query: 351 aaaccaaatagacacaaaacaaagaacagaaaacacacacacacacacacactcacacac 410
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 567 aaaccaaatagacacaaaacaaagaacagaaaacacacacacacacacacac--acacac 624
Query: 411 acacacacactcacacacacacacggagaaagagcaaaccgagcagcagcgctggtgtct 470
|||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 625 acacacacac--------------ggagaaagagcaaaccgagcagcaacgctggtgtct 670
Query: 471 atctcttcttcacttttgctttatttttaagcaggcaagattccctgctcttgctaacgt 530
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 atctcttcttcagatttgctttatttttaagcaggcaagattccctgctcttgctaacgt 730
Query: 531 actggaattaa 541
|||||||||||
Sbjct: 731 actggaattaa 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_n15.g1 MSMg01no422_n15.g1 CHROMAT_FILE:
MSMg01no422_n15.g1 PHD_FILE: MSMg01no422_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:23 2005
(296 letters)
>mm_chr15_53155851_53156546
Length = 696
Score = 549 bits (284), Expect = e-161
Identities = 293/296 (98%)
Strand = Plus / Minus
Query: 1 gaaggagaagtccatctgtctaatattcatggcctgtttgaggaggagtttctatgttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gaaggagaagtccatctgtctaatattcatggcctgtttgaggaggagtttctatgttta 437
Query: 61 gaattcactctaactttgtacacagaactcatgggtaccatgcttttgttatgaacgcaa 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gaatgcactctaactttgtacacagaactcatgggtaccatgcttttgttatgaacgcaa 377
Query: 121 gctgaatgaagagcatggaagcccgtggttctcccccttctccgcatcatcttgtggaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gctgaatgaagagcatggaagcccgtggttctcccccttctccgcatcatcttgtggaga 317
Query: 181 atgaacagcttaaaataagacctcggttccttatccaaggggaagctgcaggttccagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 atgaacagcttaaaataagacctcggttccttatccaaggggaagctgcaggttccagct 257
Query: 241 cccgagaagcagagactctgcacggttactggaaataccatttctgaacacacttg 296
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 256 cccgagaagcagaggctctgcacggttactggaaataccatttctgaacatacttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space: 197169
Effective search space used: 197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
