BAC Information

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BAC

Clone NameMSMg01-422P05
Chromosome15 (Build37)
Map Location 71,548,323 - 71,548,878
singlet/doubletsinglet
Overlap geneLOC100040847
Upstream geneLOC383051, 1700010C24Rik
Downstream geneCol22a1, Kcnk9, 1810044A24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422P05.T7 (MSMg01no422_p05.b1)MSMg01-422P05.TJ (MSMg01no422_p05.g1)
ACCAG517220AG517221
length731737
length of high quality
(start - end)
496 (33 - 528)556 (61 - 616)
definitionCHROMAT_FILE: MSMg01no422_p05.b1 PHD_FILE: MSMg01no422_p05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:31 2005CHROMAT_FILE: MSMg01no422_p05.g1 PHD_FILE: MSMg01no422_p05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTAAACGACTCACTATTTCGAGAGAATCCGCGGAATTCACTGTGT
GTCCCGTGCCTGTTAAATCCACATGATTCAATATGGCAGCCACTACCCAC
ATGCATCAGTGATTTGTTTTATGGCTATGCATATTTTGCATGCATGTATG
TGTACTATGTGCATGCAATGCCCACAGAGGCACTGGATTCCCTGGAACAG
GAGTAATAGATGGCTGTGAGCTACCATGTACATGTTGGGAATCACACTGG
GTCCTTTGGAAGAACATTCAGTTCTTTTAACTGCTTATCCATCTCTTCAG
CAGCCACGTGTCTTCTACCTAAAGTTACGTACAAATAAAGTTCAGGTCCT
TGGTCATACTGGGCACACTACAAACACTTAGTGCCCCTTTGCATTTAGGA
GCTTCCTTATGAGACAGTGCAGGCATGGAACAGAAATTCTCCATTGGGTA
ATGTTCAAATGTTTGATGAACATTGTTTATTCAATTTTCAGTCCCATGAG
TTAGGTATGGTTCGTGTTATTATTCCATAAATACGAAACATGAGACACAA
AGAGGATCAATGGATAGAATCTATTGTTTTGGAAACAGAATCCAGTGTTC
ATAGGCTGTACTTGGCCAGTACATATAAGTATGTCTTCTGTTTCAAAAAT
GTCTGAAGGCATAACCAAACAGTGGTTTTCTGATTCCTGACATTTCCAGA
ATAACACACACATACCCTTGGAGATAAAGAC
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCATTTATCGGTGCCTCCATAAATGGCAATATTTCATT
CTTATTTGCATTCATGCTTTTGTGAGACAAGCAGTGAACAGTGAAGCTGG
GATGGAAAAGGAAGATATGGCAATGTGACATGGCTTCCAGGCACTCCAGA
GGTTAGGGGAACCTTTGTGCAGGGACACGTATTTCTATGTTTTTCTCAGA
GGCTCCCTTAAGGATCTAGTTTGTGTCCAAAGCAAGCTGAGTGAGTTCCA
AATGAAATATCTGATTATGTGGAGTTGGTAGAGGGTTTCCTCTACTATGT
ACCCTTCCCAAATTTCTTGTGTCCACTCATAACAAACAGAACATTGTTAC
TATGTTCTTGTAAAAACTGTTTCTGGGTGATTGTAATGACTCCCAGAAAT
ATTTGAGAAGAAATGTGGCCAAAGACAGTCCAACACATCATCACACAATT
CTGGACCCTTATGGTACAGATCCCAGGTAAGGTCCAGAGTCTTTTGATCA
GTTTGGTTGTGACCAGAGCTATAACCACATCTCTCTCCTCCTCTTCCTCC
TCCTCCTCCTCCTCCTCCTCTTTCTCCTCCTCCTTTTCCTCCTCCTTCTC
TTCTTTTCTCCCCCTCCTTCTTTTGTCTCTCTTTCCCCCTCCCCCTATCA
CTCCCACTTCTCCCTTCCTCCTCTTCTTTTTTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_p05.g1 MSMg01no422_p05.g1 CHROMAT_FILE:
MSMg01no422_p05.g1 PHD_FILE: MSMg01no422_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:31 2005
         (556 letters)



>mm_chr15_71548123_71549078
          Length = 956

 Score = 1044 bits (540), Expect = 0.0
 Identities = 552/556 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcatttatcggtgcctccataaatggcaatatttcattcttatttgcattcatgcttt 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 tttcatttatcggtgcctccataaatgacaatatttcattcttatttgcattcatgcttt 260

                                                                       
Query: 61  tgtgagacaagcagtgaacagtgaagctgggatggaaaaggaagatatggcaatgtgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgagacaagcagtgaacagtgaagctgggatggaaaaggaagatatggcaatgtgaca 320

                                                                       
Query: 121 tggcttccaggcactccagaggttaggggaacctttgtgcagggacacgtatttctatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggcttccaggcactccagaggttaggggaacctttgtgcagggacacgtatttctatgt 380

                                                                       
Query: 181 ttttctcagaggctcccttaaggatctagtttgtgtccaaagcaagctgagtgagttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttctcagaggctcccttaaggatctagtttgtgtccaaagcaagctgagtgagttcca 440

                                                                       
Query: 241 aatgaaatatctgattatgtggagttggtagagggtttcctctactatgtacccttccca 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgaaatagctgattatgtggagttggtagagggtttcctctactatgtacccttccca 500

                                                                       
Query: 301 aatttcttgtgtccactcataacaaacagaacattgttactatgttcttgtaaaaactgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatttcttgtgtccactcataacaaacagaacattgttactatgttcttgtaaaaactgt 560

                                                                       
Query: 361 ttctgggtgattgtaatgactcccagaaatatttgagaagaaatgtggccaaagacagtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctgggtgattgtaatgactcccagaaatatttgagaagaaatgtggccaaagacagtc 620

                                                                       
Query: 421 caacacatcatcacacaattctggacccttatggtacagatcccaggtaaggtccagagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caacacatcatcacacaattctggacccttatggtacagatcccaggtaaggtccagagt 680

                                                                       
Query: 481 cttttgatcagtttggttgtgaccagagctataaccacatctctctcctcctcttcctcc 540
           |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 681 cttttgatcagtttggttgtgaccagagctataaccacatgtctctcctcctcctcctcc 740

                           
Query: 541 tcctcctcctcctcct 556
           ||||||||||||||||
Sbjct: 741 tcctcctcctcctcct 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)