BAC Information

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BAC

Clone NameMSMg01-422P11
Chromosome15 (Build37)
Map Location 10,521,977 - 10,522,212
singlet/doubletsinglet
Overlap geneRai14
Upstream geneC230086A09Rik, Prlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579
Downstream geneC1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12, Tars
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422P11.T7 (MSMg01no422_p11.b1)MSMg01-422P11.TJ (MSMg01no422_p11.g1)
ACCAG517232AG517233
length727725
length of high quality
(start - end)
464 (64 - 527)245 (66 - 310)
definitionCHROMAT_FILE: MSMg01no422_p11.b1 PHD_FILE: MSMg01no422_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:32 2005CHROMAT_FILE: MSMg01no422_p11.g1 PHD_FILE: MSMg01no422_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCAACACATCCGCGGAATTCTCAC
CTGTTCCCTGCACAATGGCTGAGAAGCACCTAAAAATGCTGAGCATCCTT
AATCATCAGAGAAATGTAAATCAAAACAACCCTGAGATTCCATCTCACAC
CAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGA
GGATGTGGAGAAAGAGGAACACTCCTTCATTGTTGGTGGGATTGCAAGCT
TGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACA
TAGTACTACTGGTTTATCCTGTAATACCTCTCCTGGGCATATATCCAGAA
GATGTCCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGC
CTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAG
AGGAATGGATACAAAAAATGTGGTACATTTACACAATGGAGCACTACTCA
GCTATTAAAAAGAATGAATTTAAGAAATTTTTAGGCAAATGGTTAGACCT
GGAGGGCATCATCCTGAGTGAGGTAACACAATAACATAAGAACTCCCAGG
ATATGTACTCACTATTAAGTGGTAAATAATCCCAGAAACTTAATATATCC
CGAAATATAACGAGAACATTTGGTAATACCCCTGGATCCTAATAAATGAA
GATTCCCGTGGTGGCCTCTCTTGCCCC
TGTGGTAGGCCTGGAGGNCGCCTGGTTCAGTAGTTGAGGNGACCTATAGA
AGGTTTCGAAAAATTCACTTGTGGAAGACTGACTGCTATTTGGTGTGGAT
TAATGTTTTGATTTAATCCAAAAATACCACCTTATTTCGTCTTGACAGTA
TTCTACTTAATTCCCCAGAGGACTGAGGGCTAACTGTTTGCCATCTTCCC
TTCCTTGTTTCCCAGTGAGTCCCAGGAAAAGCGTGTCCACCTTTGTTTGT
TGCTAAACTTCAGTCTCTCCTTTCCTCTAGAACTGCTCTCATGCTGGCTT
GTGAAACCGTCAGTTCTTACACTGTGGACGCCTTAATTAAAAAGGGAGCG
GATCTGAGCCTTGTCGATTCTCTCGGACACAATGCCTTACATTATTCCAA
ACTCTCGGAAAATGCAGGAATTCAAAACCTTCTATTATCAAAAATCTCTC
AGGATGCTGGTATGTGAAAGAAAATAGCCGAGGTTATTTTTAATTCATCC
ACTCGTTTTCCCCAAAAGGATAATGGAATTTGTGCAATATGATACGTTTT
ATTATTTTTACACATATGCTTAAAGATAGTCTTAAATGCTGTGTGTGCCG
ATGTGCGTATCATGCTCCTTTCCACTTCTTCTATCCCCTACTTCTTTTTT
TTTTTTTTTTTTTATTCGCATCCCTCCCCTCTTTTTTTTCCCCGTTCTCT
TCTTCTTCTTCTTCTCTCTTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_p11.g1 MSMg01no422_p11.g1 CHROMAT_FILE:
MSMg01no422_p11.g1 PHD_FILE: MSMg01no422_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:32 2005
         (245 letters)



>mm_chr15_10521773_10522413
          Length = 641

 Score =  414 bits (214), Expect = e-120
 Identities = 232/240 (96%), Gaps = 4/240 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   tgtggaagactgactgctatttggtgtggattaatgttttgatttaatccaaaaatacca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgtggaagactgactgctatttggtgtggattaatgttttgatttaatccaaaaatacca 381

                                                                       
Query: 65  ccttatttcgtcttgacagtattctacttaattccccagaggactgagggctaactgttt 124
           |||||||||||||||||||||||||||||||||||||||| |||||||||    ||||||
Sbjct: 380 ccttatttcgtcttgacagtattctacttaattccccagaagactgaggg----ctgttt 325

                                                                       
Query: 125 gccatcttcccttccttgtttcccagtgagtcccaggaaaagcgtgtccacctttgtttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 324 gccatcttcccttccttgtttcccagtgagtcccaggaaaagcgtgtccacctttggctg 265

                                                                       
Query: 185 ttgctaaacttcagtctctcctttcctctagaactgctctcatgctggcttgtgaaaccg 244
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgctaaacttcagtctctcctttcctctagaactgctctcatgctggcttgtgaaaccg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 641
Length adjustment: 9
Effective length of query: 236
Effective length of database: 632
Effective search space:   149152
Effective search space used:   149152
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)