BAC Information

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BAC

Clone NameMSMg01-424E09
Chromosome15 (Build37)
Map Location 56,410,325 - 56,453,290
singlet/doubletdoublet
Overlap genenone
Upstream geneMtbp, Sntb1, LOC665348, LOC100039908, Hba-ps3
Downstream geneHas2, EG594843, LOC435442, LOC100040067, LOC100039984, BC026439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424E09.T7 (MSMg01no424_e09.b1)MSMg01-424E09.TJ (MSMg01no424_e09.g1)
ACCAG518233AG518234
length732747
length of high quality
(start - end)
680 (46 - 725)511 (79 - 589)
definitionCHROMAT_FILE: MSMg01no424_e09.b1 PHD_FILE: MSMg01no424_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:11 2005CHROMAT_FILE: MSMg01no424_e09.g1 PHD_FILE: MSMg01no424_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,452,615 - 56,453,290)(56,410,325 - 56,410,834)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATCCTCATGCTTATATGCAATCATCTTATCCACCAAGACAACCC
TGAAGCCCCCAGATATTACTTTTGAAGCAGCATCTCTGGAAGTAAAGACT
TGAAATATGAGTACCTGGGCATCTGACATACACTCTACATGGGTTTTATA
AAACTAAGAGAAACATATTATCTACTGAACAAAAAAGGACAGAAGGAAAT
AGAAACCTAGCATAGCAGTTATCATAGAATTAAAGAAATAAATAAATTCT
AAAACTATGCACAGGGGGATGTTTGTAGCTCAATGGGCCTGGTGATCTTG
CTCAAAGTATTACAGAGAACAAAAAGTATTTTAAAATATGGGACCTTGAT
AAAGCTGAAAATGTCCTATGTCCTCAATGTAAAATAATTAACTTTCAAAT
TGGTAACAGTTCCATACAAAAAACCATTATTCCTTTTTTAAACTGAGCAG
GAGAGAATTATTCAGAAGAAAAACAACCTCATCTAGAACATATATTCACT
CCCCGTTTCTCATAGCTCCTCTTGTCCTTCAAGTAAAAGGTAGAAACCCA
CTGAGGAGACCCTGGGTGTACATGGATTTAAGTCATAGCAATCTTGCTTC
TCCTATGATATATTAATGTATAATTTAAGGGATCACTGAAGAAGAGATGG
TGCAGAGTGTAAGGATCAGTAGATAACCCGGA
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGACTGANACTGCAGTTGCT
GCTGTTTAAAGTCAATGGGTGGCAGGGCCTGATTGCTCTGTTGAGTTGCT
TAAATTCGTTTAAGAGAATAGATACACTCTTAAATTAGTAAACTATGCCA
ATGCCCTCAAAAAATGGTCTACAAAAATGACTCACTCCTGTTACACTGTC
AGTTGGAGCACATTAGTCATCTGCAGGTCTCTTCTCATCCTTCAGTTGTT
GGAGTGACTGTCATTGAGAGATACTCAAGGTTGACTTCTAAGAGAGGGAG
ATAGAGTTGTTACTCTCCTATGTTATGTGGGTACTCCCAAATCCCAAGGG
CATTTCTATTACATTCTCTTAATCAGTCACAAGGGTTGAGAAGAAGATTT
TATCTCTTGCACTAATTGTGACAATATTTTATAGGCTGTAATGTATTGTC
TAGTTTGTCTATCACATGTCTATCTACCTATTACCAACCTACCTGCTTAT
CTACTTTTCCTATTATAATGTAGACCTTATGAGGATGGCTTTAACTGTTC
TTTATTATGTCACTGGTGAATGGAACAGTAGTTAGTACATAGTTACTCAA
TTACTAAGTGAATGTAGGAATAGCTTTACTTGATCTATGCAACCTCAATG
AAAAAATTATAACGAAGTTTTTACTTGCTAAGACTGATAAATGGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_e09.b1 MSMg01no424_e09.b1 CHROMAT_FILE:
MSMg01no424_e09.b1 PHD_FILE: MSMg01no424_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:11 2005
         (680 letters)



>mm_chr15_56452411_56453490
          Length = 1080

 Score = 1253 bits (648), Expect = 0.0
 Identities = 669/676 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatcctcatgcttatatgcaatcatcttatccaccaagacaaccctgaagcccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 gaattcaatcctcatgcttatatgcaatcatcttatccaccaagacaaccctgaagcccc 821

                                                                       
Query: 65  cagatattacttttgaagcagcatctctggaagtaaagacttgaaatatgagtacctggg 124
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 820 cagatattacttttgaagcagcatctctggaagtaaagacttcaaatatgagtacctggg 761

                                                                       
Query: 125 catctgacatacactctacatgggttttataaaactaagagaaacatattatctactgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 catctgacatacactctacatgggttttataaaactaagagaaacatattatctactgaa 701

                                                                       
Query: 185 caaaaaaggacagaaggaaatagaaacctagcatagcagttatcatagaattaaagaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 caaaaaaggacagaaggaaatagaaacctagcatagcagttatcatagaattaaagaaat 641

                                                                       
Query: 245 aaataaattctaaaactatgcacagggggatgtttgtagctcaatgggcctggtgatctt 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 640 aaataaattctaaaactatgcacagggggatgtttgtagttcaatgggcctggtgatctt 581

                                                                       
Query: 305 gctcaaagtattacagagaacaaaaagtattttaaaatatgggaccttgataaagctgaa 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 580 gctcaaagtattacagagaacaaaaagtattttaaaatatgggaccttgatatagctgaa 521

                                                                       
Query: 365 aatgtcctatgtcctcaatgtaaaataattaactttcaaattggtaacagttccatacaa 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 520 aatgtcctatgtcctcaatgtaaaataattaactttcaaattggtaacagttccatacga 461

                                                                       
Query: 425 aaaaccattattccttttttaaactgagcaggagagaattattcagaagaaaaacaacct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aaaaccattattccttttttaaactgagcaggagagaattattcagaagaaaaacaacct 401

                                                                       
Query: 485 catctagaacatatattcactccccgtttctcatagctcctcttgtccttcaagtaaaag 544
           |||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||
Sbjct: 400 catctagaacatatattcactccctgttcctcatagctcttcttgtccttcaagtaaaag 341

                                                                       
Query: 545 gtagaaacccactgaggagaccctgggtgtacatggatttaagtcatagcaatcttgctt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gtagaaacccactgaggagaccctgggtgtacatggatttaagtcatagcaatcttgctt 281

                                                                       
Query: 605 ctcctatgatatattaatgtataatttaagggatcactgaagaagagatggtgcagagtg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ctcctatgatatattaatgtataatttaagggatcactgaagaagagatggtgcagagtg 221

                           
Query: 665 taaggatcagtagata 680
           ||||||||||||||||
Sbjct: 220 taaggatcagtagata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no424_e09.g1 MSMg01no424_e09.g1 CHROMAT_FILE:
MSMg01no424_e09.g1 PHD_FILE: MSMg01no424_e09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:11 2005
         (511 letters)



>mm_chr15_56410125_56411035
          Length = 911

 Score =  965 bits (499), Expect = 0.0
 Identities = 507/510 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgactganactgcagttgctgctgtttaaagtcaatgggtggcagggcctgattgctc 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgactgaaactgcagttgctgctgtttaaagtcaatgggtggcagggcctgattgctc 260

                                                                       
Query: 61  tgttgagttgcttaaattcgtttaagagaatagatacactcttaaattagtaaactatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttgagttgcttaaattcgtttaagagaatagatacactcttaaattagtaaactatgc 320

                                                                       
Query: 121 caatgccctcaaaaaatggtctacaaaaatgactcactcctgttacactgtcagttggag 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 caatgccctcaaaaaatggtctacaaaaatgacttactcctgttacactgtcagttggag 380

                                                                       
Query: 181 cacattagtcatctgcaggtctcttctcatccttcagttgttggagtgactgtcattgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacattagtcatctgcaggtctcttctcatccttcagttgttggagtgactgtcattgag 440

                                                                       
Query: 241 agatactcaaggttgacttctaagagagggagatagagttgttactctcctatgttatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatactcaaggttgacttctaagagagggagatagagttgttactctcctatgttatgt 500

                                                                       
Query: 301 gggtactcccaaatcccaagggcatttctattacattctcttaatcagtcacaagggttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggtactcccaaatcccaagggcatttctattacattctcttaatcagtcacaagggttg 560

                                                                       
Query: 361 agaagaagattttatctcttgcactaattgtgacaatattttataggctgtaatgtattg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaagaagattttatctcttgcactaattgtgacaatattttataggctgtaatgtattg 620

                                                                       
Query: 421 tctagtttgtctatcacatgtctatctacctattaccaacctacctgcttatctactttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctagtttgtctatcacatgtctatctacctattaccaacctacctgcttatctactttt 680

                                         
Query: 481 cctattataatgtagaccttatgaggatgg 510
           ||||||| ||||||||||||||||||||||
Sbjct: 681 cctattaaaatgtagaccttatgaggatgg 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)