BAC Information

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BAC

Clone NameMSMg01-424H06
Chromosome15 (Build37)
Map Location 102,686,296 - 102,686,599
singlet/doubletsinglet
Overlap genenone
Upstream geneKrt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050
Downstream geneHoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424H06.T7 (MSMg01no424_h06.b1)MSMg01-424H06.TJ (MSMg01no424_h06.g1)
ACCAG518369AG518370
length771744
length of high quality
(start - end)		183 (47 - 229)304 (332 - 635)
definitionCHROMAT_FILE: MSMg01no424_h06.b1 PHD_FILE: MSMg01no424_h06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:25 2005CHROMAT_FILE: MSMg01no424_h06.g1 PHD_FILE: MSMg01no424_h06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTCAGATTCCGGCGGTGGCGGCGCTTACACGCGATTCGCGTTCA
TCAATCCACGACATGAAGACAGGCGAGCGAGCGAGCGAGCGAGCGAGCAA
GCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAAAGGGAGAGAGGGAGAGGGAGAGGTTGTGNGNTTTTGNGGTGTTGTTT
TTTTGGGTGGGTGGGAGTTTTTGGTGTGGTGTGGGGGGTGGGTGGGGGGG
ATGGNGGGGGGTTTTTTTTTTTTTGGNGGNGGGGGGGGGGGGGGGGGGGG
GGGGGNGTTTTTTTGTTTGTGTGTTTGTTGTTTGTGTTTTTTTTGGGGTT
GGGGTTGTTGGGTTTTTGTGTTTTGTGTGTTTTTTGTTTTTTTTGTTAGT
TTGTTGTTTTGGGGTGTGTGTAAGTTTTAGGGAGTTGTGTTGGTATATTG
TGGGTTAGTGGTTTTGTGGATTTTGGAGATTGTTATTTTTTTTTTGGTTT
TTTTATTTGTTATTTTTTGTTGTTTTGATTGTTGAAGTTTTGTTTGTTTT
GAGTATTGTATTTGTTTTTTTTTGTGTGGTGGGGGATTTTTTTTGTTAGT
TTTTTGTTTTTAAAAATTTTTATATGTTATTTTTGGTTGGGAGAAGTATT
GTTTTTTTTTTTTTTATATGTTTATGTAATGGTGGGAGATGTGTTATTGT
TATTTATGTATGTTGATTTTT

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGTGCTCATGGAGAATCA
GTGTAAGAGTGAGTTGGGAGCCTTTGCTGCCTTGTGGGTTGCCTGTACCA
GAGCAGACCCACATTCTGCTCTCTGGCCAGCTCTACTTTCTGCCCTTCTT
ATCCCAACTTGCCTAATTGATACCTTGGCCAATGGTGTCATTAACAATGC
TTGAATAATAGCTGGACCGGCTGATTTCAAAATGGCAGAGGTGATTAATA
TGTAAGAAATCCAGTGGGGGGCATTTTTTATGGAAAGGGATGTGTTAGGA
AATGGAGCACAAGGAAGCTTCCTTCTGCAGCCCCTCGCTCACTGCCCATC
CATCACCATCAAGCAGAAGGACAGGCTTGGGGGTAGGAGTCTAACTCCCA
GCCCTTGGTTTGCTGATCCCCTCCAGTTTCCCTCCCCTGCCTCCCCCAGC
AGCACACGTTCTGACACCTACAAGCTCGTTACATGATGATGACCTATATT
TTTATCTTTTTTATGAGCATCAAACACACATCGTCTTGCAAGCACATGTG
TTTTTCCCCTATTGACGTGTGAGTGCCTTTGATGGTAATTTATTGTAAGG
TTGAGCACTCCTGTTTTTATTTGTACCCTACAAATGCTTACCATTTTGGT
GCCTCTAAACCATCCCAAATGTACCTTTTTTCCTACCCAAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_h06.g1 MSMg01no424_h06.g1 CHROMAT_FILE:
MSMg01no424_h06.g1 PHD_FILE: MSMg01no424_h06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:25 2005
         (304 letters)



>mm_chr15_102686096_102686799
          Length = 704

 Score =  580 bits (300), Expect = e-170
 Identities = 303/304 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaaagggatgtgttaggaaatggagcacaaggaagcttccttctgcagcccctcgctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaaagggatgtgttaggaaatggagcacaaggaagcttccttctgcagcccctcgctca 260

                                                                       
Query: 61  ctgcccatccatcaccatcaagcagaaggacaggcttgggggtaggagtctaactcccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcccatccatcaccatcaagcagaaggacaggcttgggggtaggagtctaactcccag 320

                                                                       
Query: 121 cccttggtttgctgatcccctccagtttccctcccctgcctcccccagcagcacacgttc 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctgggtttgctgatcccctccagtttccctcccctgcctcccccagcagcacacgttc 380

                                                                       
Query: 181 tgacacctacaagctcgttacatgatgatgacctatatttttatcttttttatgagcatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgacacctacaagctcgttacatgatgatgacctatatttttatcttttttatgagcatc 440

                                                                       
Query: 241 aaacacacatcgtcttgcaagcacatgtgtttttcccctattgacgtgtgagtgcctttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacacacatcgtcttgcaagcacatgtgtttttcccctattgacgtgtgagtgcctttg 500

               
Query: 301 atgg 304
           ||||
Sbjct: 501 atgg 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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