BAC Information

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BAC

Clone NameMSMg01-424O17
Chromosome15 (Build37)
Map Location 93,864,600 - 94,034,301
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1, Zfp42-ps1, LOC100042627, LOC100042631
Downstream geneD630010B17Rik, Adamts20, Pus7l, Irak4, Twf1, Tmem117, LOC100043315
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424O17.T7 (MSMg01no424_o17.b1)MSMg01-424O17.TJ (MSMg01no424_o17.g1)
ACCAG518725AG518726
length728758
length of high quality
(start - end)
428 (45 - 472)248 (76 - 323)
definitionCHROMAT_FILE: MSMg01no424_o17.b1 PHD_FILE: MSMg01no424_o17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:59 2005CHROMAT_FILE: MSMg01no424_o17.g1 PHD_FILE: MSMg01no424_o17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,864,600 - 93,865,038)(94,034,053 - 94,034,301)
sequence
AATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAACAGGATCCGCGG
AATTCTCTTTGCCTCGCTGCAACTCTTGTGGGAAACTTTGTCCTACACTG
AAGAGCATCAAAAAGCTGTTGAAGGGTACTTGAAGGTGCCCTTACTGTTG
TATGAATATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAC
ACACACACACATATATATATACACACATATACACACACACATATATACTT
ATATATTATGACAATTAGTAATATAATAGAATATATATAATATCAACAGT
AGCAACAGCTTTCTTTTATTCTGCAGTCATGTAAACAAATGCATAGAGAT
GTCTATCTTACTCCATTGGAATAAAAGGAAAATCCAAATCTCAGAAATCA
CCACAGTTCTGTTACTGTTGCAATCCCAGACACCAGTTTATTTTTAAATT
AGCTTCTCAATCATCAAGCGGAGGAGAAAATTCTGAGTAACATCATTATA
AAAATCTCCAAGGAAGCATGGTCACTATTATCTAACATAAAGCCAAAACA
ATATGATTTTATATTTGCAGAGACATGATATAATACTGTCCTGAATCTGT
AATACTAGAGGATGCAATTTCCAAGGTACATTATATATGGGATTGTACTT
CTTCCAGCACAGAAGGAGGCCTAATTTTGCTCTGCGTTTCCGTCTACAAA
TTTAACATACCTGGTTGAATTTCTAACT
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATTTGCTCTTCTCTACAACTGGAA
ACAAAGACACAACCATTAAATTAAACGGAATGGAATTTGCTATTAGAAAT
AAAACTTTAAAAAAAAAAACCAAACAAAAGGCCCCGAATCAGTCTGTGAT
GGCAGGAATTCAGCACAGAAGAAGATAAGTGGGTGTGTGTGTGTTTATGG
TAAGAAGTGCACACGGTTGCATGCTTCTGTTGAAGTGGACCTTGTAAATC
TCAGCCTCATGCCTTATCCTTATTTTCTACATTCTATGCATAACTTAGAT
ATAGTGTTTACTATACTGTGTTTTATTTGCCTGTATATTTATTTGATTCT
CAGATTTCTTGATGAGAGAGACAGAACCTTATTGATATTTGTATTTGGCC
TATGGTACAAGATAGGTACTCAAATAATAGATAGGTATCTTTTAGTGGTC
TAATTTGCTCACACCAATACACAAGTATGTAATACACATTGCATGCAAAT
GTATAGGCAGGTGCATGCCTGTGTATGTACAAATATAATACCCTGAAATT
TCCATATAAGATATTTTGATATGCTTTATGATGGGGGCTTCTATGAACGG
CACTATTCTATCATATTTTCCTGTGAAGTCCTGTTCCACTTTCTTAATGA
CTAACTTTTGCCTCTGCCCTTGTATCTGCATCATGCTCGCTCCAACTTCC
CCTTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_o17.b1 MSMg01no424_o17.b1 CHROMAT_FILE:
MSMg01no424_o17.b1 PHD_FILE: MSMg01no424_o17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:59 2005
         (428 letters)



>mm_chr15_93864415_93865242
          Length = 828

 Score =  667 bits (345), Expect = 0.0
 Identities = 406/443 (91%), Gaps = 28/443 (6%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctctttgcctcgctgcaactcttgtgggaaactttgtcctacactgaagagcatc 65
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 gaattctctttgcattgctgcaactcttgtgggaaactttgtcctacactgaagagcatc 245

                                                                       
Query: 66  aaaaagctgttgaagggtacttgaaggtgcccttactgttgtatgaatatctctctctct 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aaaaagctgttgaagggtacttgaaggtgcccttactgttgtatgaatatctctctctct 305

                                                                       
Query: 126 ctctctctctctctctctct--------------------ctctctctcacacacacaca 165
           ||||||||||||||||||||                    | | | | ||||||||||||
Sbjct: 306 ctctctctctctctctctctcacacacacacacacacacacacacacacacacacacaca 365

                                                                       
Query: 166 catatatatatacacacatatacacacacacatatatacttatatattatgacaattagt 225
           || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 366 cacatatatatacacacatatacacacacacatatatacatatatattatgacaattagt 425

                                                                       
Query: 226 aatataatagaatatatataatatcaacagtagcaacagctttc----ttttattctgca 281
           ||||||||||||||||||||||||||||||||||||||||||||        ||||||||
Sbjct: 426 aatataatagaatatatataatatcaacagtagcaacagctttcccag----attctgca 481

                                                                       
Query: 282 gtcatgtaaacaaatgcatagagatgtctatcttactccattggaataaaaggaaaatcc 341
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gtcatgtaaacaaacgcatagagatgtctatcttactccattggaataaaaggaaaatcc 541

                                                                       
Query: 342 aaatctcagaaatcaccacagttctgttactgttgcaatcccagacaccagtttattttt 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aaatctcagaaatcaccacagttctgttactgttgcaatcccagacaccagtttattttt 601

                                  
Query: 402 aaattagcttctcaatcatcaag 424
           |||||||||||||||||||||||
Sbjct: 602 aaattagcttctcaatcatcaag 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no424_o17.g1 MSMg01no424_o17.g1 CHROMAT_FILE:
MSMg01no424_o17.g1 PHD_FILE: MSMg01no424_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:59 2005
         (248 letters)



>mm_chr15_94033853_94034502
          Length = 650

 Score =  377 bits (195), Expect = e-109
 Identities = 235/253 (92%), Gaps = 10/253 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttgctcttctctacaactggaaacaaagacacaaccattaaattaaacggaatggaa 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tatttgctcttctttacaactggaaacaaagacacaaccattaaattaaacggaatggaa 390

                                                                       
Query: 61  tttgctattagaaataaaactttaaaaaaaaaaac--caaa----caaaaggccccgaat 114
           |||||||||||||||||||||| |||||||||||   ||||    |||||||||| ||||
Sbjct: 389 tttgctattagaaataaaacttaaaaaaaaaaaaaaacaaaaaaacaaaaggccctgaat 330

                                                                       
Query: 115 cagtctgtgatggcaggaattcagcacagaagaagataagtgggtgtgtgtgtgtttatg 174
           |||||||||||| |||||||||||||||||||||| ||| ||    ||||||||||||||
Sbjct: 329 cagtctgtgatgccaggaattcagcacagaagaaggtaactg----tgtgtgtgtttatg 274

                                                                       
Query: 175 gtaagaagtgcacacggttgcatgcttctgttgaagtggaccttgtaaatctcagcctca 234
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gtaagaagtgcacacagttgcatgcttctgttgaagtggaccttgtaaatctcagcctca 214

                        
Query: 235 tgccttatcctta 247
           |||||||||||||
Sbjct: 213 tgccttatcctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 650
Length adjustment: 9
Effective length of query: 239
Effective length of database: 641
Effective search space:   153199
Effective search space used:   153199
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)