BAC Information

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BAC

Clone NameMSMg01-425F03
Chromosome15 (Build37)
Map Location 91,506,978 - 91,507,399
singlet/doubletsinglet
Overlap geneLrrk2
Upstream geneCpne8, LOC100042462, LOC100042471, EG667682, Tcea1-ps1, Spn-ps, Kif21a, EG635871, Abcd2, LOC545126, Slc2a13
Downstream geneMuc19, Smgc, LOC100042529, Cntn1, Pdzrn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425F03.T7 (MSMg01no425_f03.b1)MSMg01-425F03.TJ (MSMg01no425_f03.g1)
ACCAG519031AG519032
length751740
length of high quality
(start - end)
386 (65 - 450)422 (70 - 491)
definitionCHROMAT_FILE: MSMg01no425_f03.b1 PHD_FILE: MSMg01no425_f03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:30 2005CHROMAT_FILE: MSMg01no425_f03.g1 PHD_FILE: MSMg01no425_f03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CATTCCCTACACGAAGAGATATTTGTTGCTCCATGTTCATTGTAACACTA
TTCACTATCTAAGGAAGCAGAACAAACTTACTTGTCCATCACCAGATGGA
CCAATAATAAAAATCTGGTACATCTATGGAATACCATTCAGCTCTAAAGA
AAACTATACTCACAAAATTTGCAAGAAAATGGAGGGACTTAGAATGTATT
GTAATATTGAGTGAGGTTACCAAATCTCAGAAAGAAAAATACCCAATGTT
CACCATCATGTTCAGATCTCAGCCTATAGTGGAGATAGATAGATAGATAG
ATAGATAGATAGATAGATAGATAGATAGATAGATACATACATACATACAT
ACATACATACATACATACATACATACATACATACATAATACATACATACA
TATATACATACCTGATAGAGAGATAGATACATACATACATGATTGATAGA
TAGATAGATACCTGATATATATATATATATAGATAGATAGATAGATAGAT
AGATAGATAGATAGACAGTCAGATAGCTAGTTCTTTCTCTTTTTATTTCC
TTTCGTCTCCTCTTTCTTTCTTTCTTTTCCATTTCTCTCTTTATTCCCTA
CTGTTACCCCCCTCCTCTTCCTTTTTTTTACCCCCTTTTATTTATCTCTT
CCTACTCATTTGTTCTCGCGTTATCTTCATCTGTCCATTCCCTCCATTCT
N
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGGACTTTTACAATTTGCTTTATCTGTGCCC
TTTTATAGTTGCAGATCTCCTAGGGCTGCTCTCAAGCTTGCCCTGTGCAT
GTCTCCTCCTGTTAGTCATTCTATTTTGCTACTCAATTTGACTTCTCTTT
TTCTACGTCATTCCAACCTTTGAAGGAAGAGAGCAAAATAAATTAAGTGA
CTTAAATGTTCTCCAACCCTTTGATTTTTTTTCACATCATTTATGAATGG
GATGCTTGAGTTTTATATCGTCCTCGTAGTAGAGGATAACAGCCCTGTCT
GTAATAACTGTACAGGGTTAAAACTTTCTCTCTCTGCAAGACAAGTTCCC
AATGAAAAGAGTAATGCTTTGCTTGTCAGGCCTGTTTTGAGGCTGAAAGT
TTCAGTTAGTCACTGAAGCTCCACTCATTGATTACAGGCTTAGCTGCTCG
AATGGATTCTTTCTTCTTTTTCTTTCTTCGGCCAAGCAGTTATTGATGCT
GTAGCTTTTTTTACCTGAGCATAACACGGCCTTCCCGGTGTTTCTTTCTT
ACCAGTCTCGACATGATGTTTTCCCTCTCTTATAATACTGTATTCCGCTC
CAATTACTTTTCTCTAAATTGCCATTTTTTTTCCAATCTTTATTTAACCA
GTCTACCCCGTTTCTTCCCCTATTTATCCCCCTACACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_f03.g1 MSMg01no425_f03.g1 CHROMAT_FILE:
MSMg01no425_f03.g1 PHD_FILE: MSMg01no425_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:30 2005
         (422 letters)



>mm_chr15_91506778_91507599
          Length = 822

 Score =  793 bits (410), Expect = 0.0
 Identities = 419/422 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggacttttacaatttgctttatctgtgcccttttatagttgcagatctcctagggctgc 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 tggacttttacaatttgctttatctgtgcccttttacagttgcagatctcctagggctgc 260

                                                                       
Query: 61  tctcaagcttgccctgtgcatgtctcctcctgttagtcattctattttgctactcaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcaagcttgccctgtgcatgtctcctcctgttagtcattctattttgctactcaattt 320

                                                                       
Query: 121 gacttctctttttctacgtcattccaacctttgaaggaagagagcaaaataaattaagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacttctctttttctacgtcattccaacctttgaaggaagagagcaaaataaattaagtg 380

                                                                       
Query: 181 acttaaatgttctccaaccctttgattttttttcacatcatttatgaatgggatgcttga 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttaaatgttctccaaccctctgattttttttcacatcatttatgaatgggatgcttga 440

                                                                       
Query: 241 gttttatatcgtcctcgtagtagaggataacagccctgtctgtaataactgtacagggtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttttatatcgtcctcgtagtagaggataacagccctgtctgtaataactgtacagggtt 500

                                                                       
Query: 301 aaaactttctctctctgcaagacaagttcccaatgaaaagagtaatgctttgcttgtcag 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 aaaactttctctctctgcaagacaagttcccaatggaaagagtaatgctttgcttgtcag 560

                                                                       
Query: 361 gcctgttttgaggctgaaagtttcagttagtcactgaagctccactcattgattacaggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcctgttttgaggctgaaagtttcagttagtcactgaagctccactcattgattacaggc 620

             
Query: 421 tt 422
           ||
Sbjct: 621 tt 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)