BAC Information

Click to search

BAC

Clone NameMSMg01-425G20
Chromosome15 (Build37)
Map Location 31,518,266 - 31,668,269
singlet/doubletdoublet
Overlap geneCmbl, Cct5, A930016P21Rik, LOC667231
Upstream geneCtnnd2, 9630009A06Rik, Dap, EG625796, 5730557B15Rik, Ropn1l, LOC622810, March6
Downstream geneTas2r119, 0610007N19Rik, Sema5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425G20.T7 (MSMg01no425_g20.b1)MSMg01-425G20.TJ (MSMg01no425_g20.g1)
ACCAG519112AG519113
length758754
length of high quality
(start - end)		591 (32 - 622)529 (62 - 590)
definitionCHROMAT_FILE: MSMg01no425_g20.b1 PHD_FILE: MSMg01no425_g20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:38 2005CHROMAT_FILE: MSMg01no425_g20.g1 PHD_FILE: MSMg01no425_g20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,518,266 - 31,518,658)(31,667,741 - 31,668,269)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGCAGCTT
TCTGCAGAAGTCAATGCCCCTCAACTCTTTCTAGGTATCATCAGAGATTC
TGAAGATGTTTATAATTTGAAGAACCCAACGTTGTTTATTTTTGCAGAAA
ATGACACTGTGATTCCACTTGAGCAGGTGAGTAGGCAGCCCTTCATTTGC
ATATCTAATTGCATAGCATGACATCTTTAGAGAAAGTTTTTTTGTTGTTG
CTTTTTTGAGACATGGTTTCTCTGTGTACCCCCTGGCTGTCCTGGAACTC
ACTCTGTAGACCAGACTGGCCTTGAAATCAGAAATCCACCTGCCTCTGCC
TTCCAAGTGCTGGGATTACAGGGGTGCGCCACCACTGCCTGGCCGAGAAA
GTTTTTAAGAACTAGTTTATTGGTTTTCCAATGATGAACATTTACTGATG
GAACTTAAGCCTTGAATGGATCTGTTCAGAATGGCAGCTGAAGGATGTAT
GTGTTCCTGGTACAGCCTGTTCACTGTGAATGGTTTCCATGGTAATCCAC
CAGTTACCATAGCCTGAGATGGATTTATTAAGCACAGGAAGATGGTTAGG
AAAGTCTAAGTTAAAAGTGGCCATTTGTCAATAAGTCTTAACTAAGATCT
CAATACAAATAATTTGCAATAGTCCTAAACTTAAAATCATTTGGGTTGCT
TTACTATGGGTAATAGTAACACACAGCAGGCCAAGTTTGAAATTGGAACC
TTTTCTGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXATTATTCTTTGGCTTGCATCCTAGACTACACACACAAAG
GAGGAAAGCACCTAGGCACCAACAGTTATCATTCCTTGCTCCTGACCCCA
TGTCTTCACTATCATGCTGGACCCTTGAACTCTAAATGAGGATAACCCCT
TTCTCCCTTAAGTGGTTTGGGGTGGTATTTTTAATTACAGACAGAAACAT
AACTAACACAGAGATTTGAGAACAACTTATAGCACTGTAATTTTTTTAAC
CAAAATATTTTCCTGCAGATTTTTATTTGATGAGTAGCAAGCATAAATGT
AGTTTTAAAATATCATCTATACTGCCCTGGAATTAAATGACACAAAAGAG
AAATACATGATTTGGAGAAGGGCCATTTTTCCTAGACTCAGAAGTCAGCA
ATGAGACGGTTATATAGAAATCTTCGCAAGACAGGAAGCTCCACATTCGA
AAACTTCAAAGAAAATCTGCACAGTCAGAGTTTACAGTGTGAAGAGATGA
CCTTGAGATAGAAATGAATAGTAATAATGACAGAAAGAGCCAGCGTGACC
TGTACCTCCCTGATTAGCTTGCTCCAGCTTCAACCATTCACTTCAAGGTT
CTTTCTGCCGCTGATTCTCCTCAGGGAAGAGGCCAGAATGGAAGACAACT
TTAGCTCTATGTGGGAGCGAAAAAACTCCCAAGACCACCAATGATCATCT
GGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_g20.b1 MSMg01no425_g20.b1 CHROMAT_FILE:
MSMg01no425_g20.b1 PHD_FILE: MSMg01no425_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:38 2005
         (591 letters)



>mm_chr15_31517868_31518858
          Length = 991

 Score =  721 bits (373), Expect = 0.0
 Identities = 388/393 (98%)
 Strand = Plus / Plus

                                                                       
Query: 199 gagaaagtttttttgttgttgcttttttgagacatggtttctctgtgtaccccctggctg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gagaaagtttttttgttgttgcttttttgagacatggtttctctgtgtaccccctggctg 458

                                                                       
Query: 259 tcctggaactcactctgtagaccagactggccttgaaatcagaaatccacctgcctctgc 318
           ||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||
Sbjct: 459 tcctggaactcactctgtagaccaggctggccttgaaatcagaaatctgcctgcctctgc 518

                                                                       
Query: 319 cttccaagtgctgggattacaggggtgcgccaccactgcctggccgagaaagtttttaag 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cttccaagtgctgggattacaggggtgcgccaccactgcctggccgagaaagtttttaag 578

                                                                       
Query: 379 aactagtttattggttttccaatgatgaacatttactgatggaacttaagccttgaatgg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 579 aactagtttattggttttccaatgatgaacatttactgatggaacttaagccccgaatgg 638

                                                                       
Query: 439 atctgttcagaatggcagctgaaggatgtatgtgttcctggtacagcctgttcactgtga 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 atctgttcagaatggcagctgaaggatgtatgtgttcctggtacagcctgttcactgtga 698

                                                                       
Query: 499 atggtttccatggtaatccaccagttaccatagcctgagatggatttattaagcacagga 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 atggtttccatggtaatccaccagttaccatagcctgagatggatttattaagcacagga 758

                                            
Query: 559 agatggttaggaaagtctaagttaaaagtggcc 591
           |||||||||||||||||||||||||||||||||
Sbjct: 759 agatggttaggaaagtctaagttaaaagtggcc 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no425_g20.g1 MSMg01no425_g20.g1 CHROMAT_FILE:
MSMg01no425_g20.g1 PHD_FILE: MSMg01no425_g20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:38 2005
         (529 letters)



>mm_chr15_31667342_31668270
          Length = 929

 Score = 1015 bits (525), Expect = 0.0
 Identities = 528/529 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attattctttggcttgcatcctagactacacacacaaaggaggaaagcacctaggcacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 attattctttggcttgcatcctagactacacacacaaaggaggaaagcacctaggcacca 869

                                                                       
Query: 61  acagttatcattccttgctcctgaccccatgtcttcactatcatgctggacccttgaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 acagttatcattccttgctcctgaccccatgtcttcactatcatgctggacccttgaact 809

                                                                       
Query: 121 ctaaatgaggataacccctttctcccttaagtggtttggggtggtatttttaattacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 ctaaatgaggataacccctttctcccttaagtggtttggggtggtatttttaattacaga 749

                                                                       
Query: 181 cagaaacataactaacacagagatttgagaacaacttatagcactgtaatttttttaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cagaaacataactaacacagagatttgagaacaacttatagcactgtaatttttttaacc 689

                                                                       
Query: 241 aaaatattttcctgcagatttttatttgatgagtagcaagcataaatgtagttttaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 aaaatattttcctgcagatttttatttgatgagtagcaagcataaatgtagttttaaaat 629

                                                                       
Query: 301 atcatctatactgccctggaattaaatgacacaaaagagaaatacatgatttggagaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atcatctatactgccctggaattaaatgacacaaaagagaaatacatgatttggagaagg 569

                                                                       
Query: 361 gccatttttcctagactcagaagtcagcaatgagacggttatatagaaatcttcgcaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gccatttttcctagactcagaagtcagcaatgagacggttatatagaaatcttcgcaaga 509

                                                                       
Query: 421 caggaagctccacattcgaaaacttcaaagaaaatctgcacagtcagagtttacagtgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 caggaagctccacattcgaaaacttcaaagaaaatctgcacagtcagagtttacagtgtg 449

                                                            
Query: 481 aagagatgaccttgagatagaaatgaatagtaataatgacagaaagagc 529
           |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 448 aagagatgacctcgagatagaaatgaatagtaataatgacagaaagagc 400


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |