BAC Information

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BAC

Clone NameMSMg01-425M10
Chromosome15 (Build37)
Map Location 45,622,054 - 45,622,542
singlet/doubletsinglet
Overlap genenone
Upstream geneA930017M01Rik, EG432950, Kcnv1
Downstream geneLOC100039389, EG432951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425M10.T7 (MSMg01no425_m10.b1)MSMg01-425M10.TJ (MSMg01no425_m10.g1)
ACCAG519378AG519379
length730740
length of high quality
(start - end)
579 (65 - 643)487 (66 - 552)
definitionCHROMAT_FILE: MSMg01no425_m10.b1 PHD_FILE: MSMg01no425_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:05 2005CHROMAT_FILE: MSMg01no425_m10.g1 PHD_FILE: MSMg01no425_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAAATGCGCGGAATTCCATG
AGGTTTCTTACAACTCTTATGTTTGTCGGAGTAGAAAAATCAAATACCTT
GGGTATCCTAGGTTTTGGGCTAATATCCACTTATCAGCGAGTACATATTG
TGTGAGTTCCTTTGTGATTGGGTTACCTCACTCAGGATGATGCCCTCCAG
GTCCATCCATTTGGCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTG
AGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTATCCATTCCTCT
GTTGAGGGGCTTCTTTGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGC
TGCTATGAACATAGTGGGGCATCAAGAAAAATGAAGACTGAAGTGTGGAC
ACTATGCCCCTCCTTAGAAGTGGGAACAAAACACCCATGGAAGGAGTTAC
AGAGACAAAGTTTGGAGCTGAGACGAAAGGATGGACCATGTAGAGACTGC
CATATCCAGGGATCCACCCCATAATCAGCTTCCAAACGCTGACACCATTG
CATACACTAGCAAGATTTTATCGAAAGGACCCAGATGTAGCTGTCTCTTA
TGAGACTATTCCGGGGCCTAGCAAACACAGAAGTTGATACTTCACAGTCA
GCTAATGTATGGATCATAGGGCTCCCAATGGAGGATGCAGAGAAAGTACC
CTTGAACTCTAGGGATTTGCACCCCTGTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATCAGACATTGGCTTTGGCCTTGTTTGTTGCTGTG
TGGTTGACAGGGATATATTTAGAAGCATGTCTGTAGCCTTCCCCATTTTG
ACTGTTCTTTTACCATTACAAACATCTGAAAAACACAAGTAGGGATTTTT
TTATTATGGTTTGATAGTGTACTATATTGAGATTCTCTGAATATAATTAG
CCTGGTTTTTAGATCCCTGCATTGTGGCAGAAATGGATCTCATTAGTGCT
GTTTAAACCCATATTAATAATACTGCCTTAAATCAATCTTCAGTAGGATC
CTTCCTCATCAGCTAGGAATCTCTACCATCAGAAATTTAAATCTTAACTG
TTTCCCTCTTATTTATTATATAATCTCAGTATTCTTCCTCGTAGATAAGA
GAAATATAAATTTAGTCAAGGGAAAGCAATACAGAAGACATTTATAAAGA
TATTTATGATGAGCATATCCACAAACCATCTATCTGTCATTCTCTACATC
CTTGTATGTAATTAGACCTAGTCTGAAATCTAAAGCACAGACATAGGTCT
TTCCTATTCATCTCTTCATTATATATGTGTGGAGCCTTTATTTGTTGTAT
AAAGATAAAAAGACTTAATTTTTTTCATGAGGTCACTAATTTATTTCCTT
TACACCCCCCCTTCCTTAAAATATTAAGAATGGTGGGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_m10.g1 MSMg01no425_m10.g1 CHROMAT_FILE:
MSMg01no425_m10.g1 PHD_FILE: MSMg01no425_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:05 2005
         (487 letters)



>mm_chr15_45621854_45622742
          Length = 889

 Score =  849 bits (439), Expect = 0.0
 Identities = 476/489 (97%), Gaps = 2/489 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcagacattggctttggccttgtttgttgctgtgtggttgacagggatatatttagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 atcagacattggctttggccttgtttgttgctgtgtggttgacagggatatatttagaag 630

                                                                       
Query: 61  catgtctgtagccttccccattttgactgttcttttaccattacaaacatctgaaaaaca 120
           ||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 629 catgtctgtagcctttcacattttggctgttcttttaccattacaaacatctgaaaaaca 570

                                                                       
Query: 121 caagtaggg--atttttttattatggtttgatagtgtactatattgagattctctgaata 178
           |||||||||   ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 569 caagtagggttttttttttattatggtttgatagtatattatattgagattctctgaata 510

                                                                       
Query: 179 taattagcctggtttttagatccctgcattgtggcagaaatggatctcattagtgctgtt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 taattagcctggtttttagatccctgcattgtggcagaaatggatctcattagtgctgtt 450

                                                                       
Query: 239 taaacccatattaataatactgccttaaatcaatcttcagtaggatccttcctcatcagc 298
           ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 449 taaacccatattaataatactgccttaaatcaatctttagtaggatcgttcctcatcagc 390

                                                                       
Query: 299 taggaatctctaccatcagaaatttaaatcttaactgtttccctcttatttattatataa 358
           ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 389 taggaatctctaccatcagaaatctaaaccttaactgtttccctcttatttattatataa 330

                                                                       
Query: 359 tctcagtattcttcctcgtagataagagaaatataaatttagtcaagggaaagcaataca 418
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tctcagtgttcttcctcgtagataagagaaatataaatttagtcaagggaaagcaataca 270

                                                                       
Query: 419 gaagacatttataaagatatttatgatgagcatatccacaaaccatctatctgtcattct 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gaagacatttataaagatatttatgatgagcatatccacaaaccatctatctgtcattct 210

                    
Query: 479 ctacatcct 487
           |||||||||
Sbjct: 209 ctacatcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 889
Length adjustment: 10
Effective length of query: 477
Effective length of database: 879
Effective search space:   419283
Effective search space used:   419283
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)