BAC Information

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BAC

Clone NameMSMg01-427F21
Chromosome15 (Build37)
Map Location 18,906,593 - 18,906,991
singlet/doubletsinglet
Overlap geneCdh10
Upstream geneLOC666835, LOC666839
Downstream geneEG666857, EG666875, LOC621884, LOC100040265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427F21.T7 (MSMg01no427_f21.b1)MSMg01-427F21.TJ (MSMg01no427_f21.g1)
ACCAG520585AG520586
length793775
length of high quality
(start - end)		391 (79 - 469)404 (82 - 485)
definitionCHROMAT_FILE: MSMg01no427_f21.b1 PHD_FILE: MSMg01no427_f21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:13 2005CHROMAT_FILE: MSMg01no427_f21.g1 PHD_FILE: MSMg01no427_f21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTAACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAG
GATCCGCGGAATTCAAAGAATATTATCATTTTCATAATAAAACATGACTG
GAAACAACCTAGATGCCCCTCAAATGAAGAATGAATAAAGAAAATGTGGT
ACATCTACACAATGAAATATTATTCCCCTATTAAAAACAAAGACATCGTG
AGAATTGAAAGTAAATGGATGGAACTTGAGAATATCATCCAGAGTACAGT
AACAGATACCCGGAAAGACACATACAAACACACATATAAAATTAAACATT
TAGTCACAAAGTGCAGATGTTACAAACTACAGATTCAAAGAAATGGGGTA
ATAAAGACGGCCCAAGAGACGATATGTGAATCTCACTCAGAAGGGGAAAC
AAAATAATCCTCACAGGCAGATGGAGACAGGAACCTGTTGGGGGCAGGGA
AGGAGAGGGTCTGAGGACGGGTATGGAGATCCCCATCAGGTGTGGCAGGC
AGAGGCAGGAGAGGCCTGCCAGTAAAACTGGAAATTGATGGGGGGCATCT
CTGGGACCATCTGTAAACCAAGGAAGGGAAAGGCTATTAAGAAGGTTTTG
AGATTATTCCCAAAATTATTTTNTTCCTCCTTTTCCCTCCCAAAAAAAGA
AGGGGGAAAAACGGGCCTCTGGGCCTCTTACCTTCAATAATGTTTTTCCT
CCCCCTTCTCTCCTCATTTCCCTTCCCTACACTTTTCCTCCTCTTAATTT
TTTACTCCCCCTCTCCTTAATTTTCTCTCTCTTTTCTCTCCTC

NNNNNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCATTTTTTTTCCAGAA
AACTCTGGAACACTTTGAAGACAATTTTCTTTGAGTACAGAGGGAAAAAA
TTAATGTATCTTTATACTCATTTACATAAATACTTTCTAATGGATGAGAA
CTGATGATAGTCAATATAATTATATCAATAAATTCAAAACAGTTGGGTGT
ATTTTAAACCAATAAAACATATTCCCTTTTCTGTGTAAGTTGTAGAAGCT
ACTAAAAATCAGCATGAATAGTACTACCTCAACAGTATCAAACCCCATAA
TGAATATTGTCTCTAAGCTAACCAAGAAGTTAAATGAACTGATAACTTTC
AATACTTGAACAGACATACAAGAAACCAAGTTAAAAGTGAACAGACTTTC
AGATCTAAGCACATGCTGCTAAGCAATCAAAGAGATCCAAGCCAAAAATA
AAAATGTAGGACAAAGGCTCAGGCACATACCCACGGTGAAATCCACACAA
ATTAAAATTAATGGAACAAAGAACATTCTCTCTTTTCTTTCCCTGGGCTT
TTCCCCATCCCCTGGGGNGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_f21.g1 MSMg01no427_f21.g1 CHROMAT_FILE:
MSMg01no427_f21.g1 PHD_FILE: MSMg01no427_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:13 2005
         (404 letters)



>mm_chr15_18906387_18907191
          Length = 805

 Score =  750 bits (388), Expect = 0.0
 Identities = 397/400 (99%), Gaps = 2/400 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   ttttttttccagaaaactctggaacactttgaagacaattttctttgagtacagaggg-a 64
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 207 tttttttt-cagaaaactctggaacactttgaagacaattttctttgagtacagagggaa 265

                                                                       
Query: 65  aaaaattaatgtatctttatactcatttacataaatactttctaatggatgagaactgat 124
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaaaattaatgtatctttacactcatttacataaatactttctaatggatgagaactgat 325

                                                                       
Query: 125 gatagtcaatataattatatcaataaattcaaaacagttgggtgtattttaaaccaataa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gatagtcaatataattatatcaataaattcaaaacagttgggtgtattttaaaccaataa 385

                                                                       
Query: 185 aacatattcccttttctgtgtaagttgtagaagctactaaaaatcagcatgaatagtact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aacatattcccttttctgtgtaagttgtagaagctactaaaaatcagcatgaatagtact 445

                                                                       
Query: 245 acctcaacagtatcaaaccccataatgaatattgtctctaagctaaccaagaagttaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 acctcaacagtatcaaaccccataatgaatattgtctctaagctaaccaagaagttaaat 505

                                                                       
Query: 305 gaactgataactttcaatacttgaacagacatacaagaaaccaagttaaaagtgaacaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gaactgataactttcaatacttgaacagacatacaagaaaccaagttaaaagtgaacaga 565

                                                   
Query: 365 ctttcagatctaagcacatgctgctaagcaatcaaagaga 404
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctttcagatctaagcacatgctgctaagcaatcaaagaga 605


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 805
Length adjustment: 9
Effective length of query: 395
Effective length of database: 796
Effective search space:   314420
Effective search space used:   314420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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