BAC Information

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BAC

Clone NameMSMg01-427I15
Chromosome15 (Build37)
Map Location 74,597,279 - 74,597,781
singlet/doubletsinglet
Overlap genenone
Upstream geneGm628, LOC100041273, EG625276, LOC100040966, EG666113, LOC100041307, LOC100040984, Bai1, 1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d
Downstream geneD730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427I15.T7 (MSMg01no427_i15.b1)MSMg01-427I15.TJ (MSMg01no427_i15.g1)
ACCAG520715AG520716
length740744
length of high quality
(start - end)		509 (53 - 561)551 (83 - 633)
definitionCHROMAT_FILE: MSMg01no427_i15.b1 PHD_FILE: MSMg01no427_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:26 2005CHROMAT_FILE: MSMg01no427_i15.g1 PHD_FILE: MSMg01no427_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTATTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGG
ATCCGCGGAATTCACCCATTTGCCCTGGAAGTATCATAGGGATTGTCAAG
ACCTCATCCTGGGGATGGAGCGCAGGTGAGAAACTGGCTAGCACTCGATG
TAATCACCCATACTGGTGTTATGACTAAGGGAGGCATCACATTACTTAAT
CTTACAACTGAACTCATCTCAAGTCTGTCCTCATTGCTAACAAAATATGG
CCCACTGGCTCTTCCTGGACCACTCAACCCAGCAAGCCTTCATCACTCCC
CATGCTGTCCTAACCTACTTGTTTTGTTTATACTTGATGTCTCGAAACTC
ATTTTGCGATCTTTACTGGATGTCATGAAAATCTGAGCTCTGTGTGTGCC
TTGTGTACATCTATATTCCCATGTGTCCAGCATAAAGACATAAGCATGGA
TGATACTCTGCAAATCATACTTACAGGATGGGTGGGCAGGCAGACAGACA
GATAGATGAATGGATAGATGGACAGATGGGTATATTGAAGATGGGTGGGT
AGATGAATGCCCTCCCCTCCTTCTTCTATCTTCTCCCTCCCTCTCCTTCA
TCTCCTTACCCTTTACTTCTATCCCCATTCTTCGTTCAATCTATTCTCTG
ATTTTCTTATCTTTTTTTTTTTTTTTATATCATCTATTCCTTGTCGCATC
CTTCTACCCTTTCTCTACTACATTCCAGCCCTCCCAACTN

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGACTGGAACTCAAGCA
GGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTACTTACT
GGCTTGCTTCCCCTGACTTGCTCAGCTTGCTCTCTTATAGAACCCAAGAC
TACCAGCTCAGGGATGGCACCACCCACACAGGGCCCTCTCCACCTTGATC
ACCAACCTAGAAAATGCCCCACAGCTGGATCTCATAGAGGCACTTCCCCC
ACAGTTCTCTGTGATAACTCCAGCCTGTGTCAAGTTGACACGCAAAACCA
GCCAGTACATGACCAAAACAACTTTTATAAGAACAACATTTAATTGGGGC
TGGCTTCCAGGTTCAGAGGTTCAGTTCATTATCATCAAGTCGAGAACACA
GCAGCATCCAGGCAGGATGAGCTGAGAGTTCTACATCTTCATCTGAAGGT
GGAATATTCCAGACAGCTAGGATGAGGGTCTTATAGCCCACACCCAGTGA
CACATCCACTCCAACAGGGCCAAACCTTCTAATAGCGCCACTCCCTGGGC
GGAGCATATGCAAACCATCACACTGTCTAGAGTGAAGAACCAGACTCAGG
GTAACTAGAGGATGCTGCTGGTATGCTACTGGTCAAAAAGGGCTTTGCCC
TGCATTCAACTCTCCTGGGACCAGTTCCTGAATGCTCCCCCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_i15.b1 MSMg01no427_i15.b1 CHROMAT_FILE:
MSMg01no427_i15.b1 PHD_FILE: MSMg01no427_i15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:26 2005
         (509 letters)



>mm_chr15_74597143_74598051
          Length = 909

 Score =  926 bits (479), Expect = 0.0
 Identities = 497/507 (98%), Gaps = 8/507 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcaccca----tttgccctggaagtatcatagggattgtcaagacctcatcctgg 60
           ||||||||||||    |    |||||||||||| ||||||||||||||||||||||||||
Sbjct: 639 ggaattcacccaaaagt----cctggaagtatcttagggattgtcaagacctcatcctgg 584

                                                                       
Query: 61  ggatggagcgcaggtgagaaactggctagcactcgatgtaatcacccatactggtgttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ggatggagcgcaggtgagaaactggctagcactcgatgtaatcacccatactggtgttat 524

                                                                       
Query: 121 gactaagggaggcatcacattacttaatcttacaactgaactcatctcaagtctgtcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gactaagggaggcatcacattacttaatcttacaactgaactcatctcaagtctgtcctc 464

                                                                       
Query: 181 attgctaacaaaatatggcccactggctcttcctggaccactcaacccagcaagccttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 attgctaacaaaatatggcccactggctcttcctggaccactcaacccagcaagccttca 404

                                                                       
Query: 241 tcactccccatgctgtcctaacctacttgttttgtttatacttgatgtctcgaaactcat 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 403 tcactccccatgctgtcctaacctacttgttttgttcatacttgatgtctcgaaactcat 344

                                                                       
Query: 301 tttgcgatctttactggatgtcatgaaaatctgagctctgtgtgtgccttgtgtacatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tttgcgatctttactggatgtcatgaaaatctgagctctgtgtgtgccttgtgtacatct 284

                                                                       
Query: 361 atattcccatgtgtccagcataaagacataagcatggatgatactctgcaaatcatactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 atattcccatgtgtccagcataaagacataagcatggatgatactctgcaaatcatactt 224

                                                                       
Query: 421 acaggatgggtgggcaggcagacagacagatagatgaatggatagatggacagatgggta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 acaggatgggtgggcaggcagacagacagatagatgaatggatagatggacagatgggta 164

                                      
Query: 481 tattgaagatgggtgggtagatgaatg 507
           |||||||||||||||||||||||||||
Sbjct: 163 tattgaagatgggtgggtagatgaatg 137


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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