BAC Information

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BAC

Clone NameMSMg01-428A13
Chromosome15 (Build37)
Map Location 67,181,049 - 67,181,313
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc6, LOC100040860, Tmem71, LOC100040881, Phf20l1, Tg, Sla, Wisp1, Ndrg1, LOC100040667, St3gal1
Downstream geneZfat1, LOC100041000
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428A13.T7 (MSMg01no428_a13.b1)MSMg01-428A13.TJ (MSMg01no428_a13.g1)
ACCAG521093AG521094
length744782
length of high quality
(start - end)
271 (47 - 317)128 (74 - 201)
definitionCHROMAT_FILE: MSMg01no428_a13.b1 PHD_FILE: MSMg01no428_a13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:05 2005CHROMAT_FILE: MSMg01no428_a13.g1 PHD_FILE: MSMg01no428_a13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXATACAGAAGAGGATCC
GCGGAATTCAGTTTTCCATGAATTTTGGAAGGGAAGCAAGATTTAAGCAG
TTTGTCTTTACTACTCCAGCACGTTTGAGTTTGGTGTTACAGAACAGTGC
CCTTAGGCATCATTTGGGAGCATGTACATGACATCAATCTTGGAAGAAAC
TATGTTGTACAGAGTAAAATAGAAGCCTCAGGGAAGGAATGTGCCGGACC
CACACTAAGGTGACAATACCTTTGTTCTCAAAAGAATGTATGAGAAGAGA
CTGGAGACCGCTGGTACTCTTTGCCCAGCATATATAGTCAGTTATCTGTC
TTCACTTGCTTCTGAATTGGAAAGGCTCCTCTGGTCTCTTTCACAACTCC
AGCCCTCTTCCTTCAGTCCTAGACAATACACAAGCTAGGACCTATGCAAA
GTTGGTGTTCATTACAAAATTCTCTGGACAGTAATACCAGAATGGCGGCT
TCTTACTCATATAGGATGAGTCTTTCCCCCCTGTTCTAATTAGCGTTTCT
ATTACCGGAATATATCATTCATCTTGGATTTCCAGGTAAAAACCCATCCT
TGGATGAATCCCCAGCTTATATTTTGTTTTTTCCAGATCTGGACTCCCGC
AATTTTAACACACTCTCATTCAGGGGCGCTGCTTACTGTTTTGGTCACCA
GTACCTTGCCTTCCTCCACTTTCTTTTTTCCCCCCAGGATTACC
CATGCTCTGNNTANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCTCTCCACATTGCTTACAAGTCAC
AGGAGCACAGCATAAAATGGCAGTGCTCAGGATTTGGATTAAGTCTTGGG
GACTGGCTGGNTAGCTGAGATTTTGGTCCTGAAGGAACATGCACAGTGAA
AANCATGGNTTCTGGAACCCTGCCACGCCCNTTTTGNCCAATTTTTTTTT
TTTTTNTNNNAAAGGTGTTGGGCACCATGTNNNNNNNNAACTTTNNTTTG
GCCTGGTNNNNNTTCCTTTTTATACCATCTCGAATCCCCCAGNNAGCTGC
CCNTNTTTCTTTNTTTTTTTTTTTGGCACTGNCCCCTTTTGTTCTTTTTC
CCTGTCTCAAAAAAGGNNTTTGNTGGCCCCTTTTTTTATTTTTTTTTTTT
TCCCCNNCGCTTTTNCCTNTTTTTTCCTTTTTCCCCCCCCCCCTCCCTTT
CTTTTGTTTTNNTNTTTTTTTTCGCTTCCCCCCCCCCCCGGGGAGGGCTG
GAGCGAANGGTTNNNTGTTCTTTNTNNTTCCCCCCCAGAAAAAGAGGGAG
TGAGATGTTTTTGGGTCCCCCCCCCCCTTCCTTTACTNTTCCTTTTTTCT
TTTTTTTTTTNCCCTCCTTCCTTTCTTTTTTTCCCCCCCCCCTTTTTTTT
TTTTTTTTTTTTCTCCCTTTTTTCCCCTCTCCCTCTCTTCTCCTTTTTCT
TTTTCGTTCTTTTTCCCCCTTAGGATCTATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_a13.b1 MSMg01no428_a13.b1 CHROMAT_FILE:
MSMg01no428_a13.b1 PHD_FILE: MSMg01no428_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:05 2005
         (271 letters)



>mm_chr15_67180842_67181513
          Length = 672

 Score =  487 bits (252), Expect = e-142
 Identities = 262/266 (98%), Gaps = 3/266 (1%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcagttttc--catgaattttggaagggaagcaagatttaagcagtttgtctttac 65
           |||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gaattcag-tttcaacatgaattttggaagggaagcaagatttaagcagtttgtctttac 414

                                                                       
Query: 66  tactccagcacgtttgagtttggtgttacagaacagtgcccttaggcatcatttgggagc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tactccagcacgtttgagtttggtgttacagaacagtgcccttaggcatcatttgggagc 354

                                                                       
Query: 126 atgtacatgacatcaatcttggaagaaactatgttgtacagagtaaaatagaagcctcag 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 atgtacatgacatcaatcttggaagaaactatgttgtacagagtaaaatagaagcctcag 294

                                                                       
Query: 186 ggaaggaatgtgccggacccacactaaggtgacaatacctttgttctcaaaagaatgtat 245
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ggaaggaatgtgccggactcacactaaggtgacaatacctttgttctcaaaagaatgtat 234

                                     
Query: 246 gagaagagactggagaccgctggtac 271
           ||||||||||||||||||||||||||
Sbjct: 233 gagaagagactggagaccgctggtac 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 672
Length adjustment: 9
Effective length of query: 262
Effective length of database: 663
Effective search space:   173706
Effective search space used:   173706
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)