BAC Information

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BAC

Clone NameMSMg01-428E01
Chromosome15 (Build37)
Map Location 41,560,633 - 41,561,036
singlet/doubletsinglet
Overlap genenone
Upstream geneZfpm2
Downstream geneOxr1, Abra, EG432946, LOC432947, LOC100039268, LOC100039197, Angpt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428E01.T7 (MSMg01no428_e01.b1)MSMg01-428E01.TJ (MSMg01no428_e01.g1)
ACCAG521261AG521262
length740762
length of high quality
(start - end)
545 (75 - 619)423 (79 - 501)
definitionCHROMAT_FILE: MSMg01no428_e01.b1 PHD_FILE: MSMg01no428_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:23 2005CHROMAT_FILE: MSMg01no428_e01.g1 PHD_FILE: MSMg01no428_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTCATTTTACTCAGAGCTACTAAGAGCTGGCTCCTTGAG
CTCATCTAGTGATGAGTATAGGCTCCTTCTCCTAGAAACCTCCGCTAATT
GATCTTTTTTCTTTTCTTTTTTCTTTTCCTTCCTTCTAATCTCTCCCCAG
GTATTCTTACCTGACCTAAACTTTTCCTCGGGTTCAAGACCCATGGAAAG
GCCTGTATACTTATTTTGTGTACCATATTTCCTCTTTGCTCCTACTCTCT
CTCCCCGCTTTACTTCTGATAGATTGTTCTGAATTTCATCCAGAATTTTC
AGCCCTGCCTTAACCGCTTGATAACATGTGAAAAGGAACAAAAAGGCTCC
TAACACTAGAGAAAGTTCAAGGCCAAACATACCTTGTAAAGCTATTTCCC
ACTTTACTTCTGATAGACTGTCTTGAATTTCATTAGAAAGTTCAAGGCCA
GACGTACCTTGTAAAGCTATTTCCCACTTTACTTCTGATAGACTGTCTTG
AATTTCGTTAGAATGTTCAAGGCCAGACTTACCTTGTAAAGCTATACTTA
CGGGTACCCTGTTCCCCAGCTGAAGAGTTCTGAATTCACGCAGTTGAATC
CTTCTCAACAGTCTGTGTTGTGGGAACACTTCATTACCACTGTTCCCCAG
CTGAGGAGTTCTGAATTCAGGCTGGATCCTTCTCAACAGG
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCATCCACTAGCAGAACTCT
CAGTTAACCTACAAGTGCAAAAATGATTCCTCTGGGTCTTGGTTTTAACT
ACTTGGCGTACTGTCAAGGAAAGAATGAACAGTAAACTTTATTTAAAAAG
TTCAAATAATATATAAAAATATTCAGACAAAATATAAATACAGTTAATAC
CAAAGAAAAAGATTAATATAAATGAGTGTGCTAATGACTCCCAAATGTGT
TGGCTTTGTGTCTTTATCTGTTTTATAATATCCTAATTTGGGGGATACTT
TATGAAAACAACCAGCTGTGTAGGACAGACAGGATTTTCTGCAAGTTCTT
CACCTTAAGAATTCAGAAAAATGTGGGTGAGCGGGTGGGTGAGCACCCTC
ATAGAAGCAGGGGGGGGTGGAGGTTGAGATANNTNNTTTTTTTTTTTTTT
TTTNNTTTTTTNNTNNTGGGGTTTTTTTTTNNTTTTTTTTTTTNTTNTTT
TTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTNNNTTT
TTTTTTTTTTTNTTTNTNTTTTTTTTTTTTTTTTCCTTTTTTTNTTTTTN
TTTTTTTCTNNTTCTTTTTTTTTTTTTTTTTTTTNNTTTNTTTTTTNNNT
CTNNNNTTTTTTTCTTTTTTTTTTTTTTCCCTCTCTTTTTCTCCCTTTTT
TTTCCCCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_e01.g1 MSMg01no428_e01.g1 CHROMAT_FILE:
MSMg01no428_e01.g1 PHD_FILE: MSMg01no428_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:23 2005
         (423 letters)



>mm_chr15_41560433_41561255
          Length = 823

 Score =  750 bits (388), Expect = 0.0
 Identities = 400/404 (99%), Gaps = 1/404 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcatccactagcagaactctcagttaacctacaagtgcaaaaatgattcctctgggtc 60
           ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcatccactagcaaaactctcaattaacctacaagtgcaaaaatgattcctctgggtc 260

                                                                       
Query: 61  ttggttttaactacttggcgtactgtcaaggaaagaatgaacagtaaactttatttaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggttttaactacttggcgtactgtcaaggaaagaatgaacagtaaactttatttaaaa 320

                                                                       
Query: 121 agttcaaataatatataaaaatattcagacaaaatataaatacagttaataccaaagaaa 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttcaaatcatatataaaaatattcagacaaaatataaatacagttaataccaaagaaa 380

                                                                       
Query: 181 aagattaatataaatgagtgtgctaatgactcccaaatgtgttggctttgtgtctttatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagattaatataaatgagtgtgctaatgactcccaaatgtgttggctttgtgtctttatc 440

                                                                       
Query: 241 tgttttataatatcctaatttgggggatactttatgaaaacaaccagctgtgtaggacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttttataatatcctaatttgggggatactttatgaaaacaaccagctgtgtaggacag 500

                                                                       
Query: 301 acaggattttctgcaagttcttcaccttaagaattcagaaaaatgtgggtgagcgggtgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaggattttctgcaagttcttcaccttaagaattcagaaaaatgtgggtgagcgggtgg 560

                                                       
Query: 361 gtgagcaccctcatagaagcagggggggg-tggaggttgagata 403
           ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 gtgagcaccctcatagaagcagggggggggtggaggttgagata 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)