BAC Information

Click to search

BAC

Clone NameMSMg01-429I02
Chromosome15 (Build37)
Map Location 66,528,147 - 66,528,299
singlet/doubletsinglet
Overlap geneTg
Upstream geneC920006C10Rik, Oc90, F930104E18Rik, LOC100040835, Kcnq3, Lrrc6, LOC100040860, Tmem71, LOC100040881, Phf20l1
Downstream geneSla, Wisp1, Ndrg1, LOC100040667, St3gal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429I02.T7 (MSMg01no429_i02.b1)MSMg01-429I02.TJ (MSMg01no429_i02.g1)
ACCAG522217AG522218
length743737
length of high quality
(start - end)
499 (36 - 534)153 (76 - 228)
definitionCHROMAT_FILE: MSMg01no429_i02.b1 PHD_FILE: MSMg01no429_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:01 2005CHROMAT_FILE: MSMg01no429_i02.g1 PHD_FILE: MSMg01no429_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTTG
TGTCTGGGTTACCTCACTCAGGATGATACCCTCCAGGTCCATGCATTTGC
CTAGGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAATACTCCATT
GTGTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCT
GGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAT
TGGAGCATGTGTTCTTTTATAAAATATTTTTTATTAGGTATTTTCCTCAT
TTACATTTCCAATGCTATCCCAAAAGTCCCCTATACCCTCCCCCTACTCC
CCTACCCACCCACTCCCACTTTTTGGCCCTGGCGTTCCCCTGTACTGGGG
CATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGAC
TAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCAGGGTAC
TGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGTAGACCCCTTTAGC
TCCTTGGGTAATTTCTCTAGCTCCTCCATTGTGGGCCCTGTGATCCATCC
CATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAA
CCTCATGAGCATGTGTTCTTATTACCCGTTGGAACATCTTTCGGGGTTAA
GCCTAGGGTATTACCACAGAAACCCTGCCATACCTCTCCTGGG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCTTGTGTTATTATGAGAATAAAC
TAGGCCTTCCTCAGTTTCGTTGTAGGGGGAGCCTGAGGCTTGATGAGGCT
GCCCAACATCTTCAAGGCAGCAGTTCAGGTAAACTTACCAATGCTGTACA
AATCTGGAAGTGAGCCCACTGAGATGTCCNTNNCAAGCTGGGTAACTTNN
TCCACGNTAANNNCATTTAACTCCNNTAAGCGCTCTGGCAGTCAGACACC
CCACCTGTANTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTNNTNNTNNNTTTNTNNNNNTNNNNTTTNTTTT
NTTTTTTTTTTTTNNTTTTNNNNNTTTTTTTTTNNTTTTTTTTTTTTTTT
TTTTTNNTTTTTTNTTTNNTTTTTTNNNNNNNTTTTTTNTTTTTTTTTTT
TTTTTNNNTTNTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTCCCCNTT
TTTTTTTTTTTTTNNTTTTTNNTTTTTTTTTTNTTTTTTNNNTTTTTTNT
TTTTTTTTTTNTNNTTTTTTTTCCCCTTTTTNNTTTNNNNNTTNTTTTTT
NNNTTTTNTNNNNNTCTTTTTTCCCCCCCCCCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_i02.g1 MSMg01no429_i02.g1 CHROMAT_FILE:
MSMg01no429_i02.g1 PHD_FILE: MSMg01no429_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:01 2005
         (153 letters)



>mm_chr15_66527947_66528499
          Length = 553

 Score =  273 bits (141), Expect = 4e-78
 Identities = 150/153 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccttgtgttattatgagaataaactaggccttcctcagtttcgttgtagggggagcctg 60
           |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct: 353 tccttgtgttattatgagaatagactaggccttcctcagtttcattgtagggggagccag 294

                                                                       
Query: 61  aggcttgatgaggctgcccaacatcttcaaggcagcagttcaggtaaacttaccaatgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aggcttgatgaggctgcccaacatcttcaaggcagcagttcaggtaaacttaccaatgct 234

                                            
Query: 121 gtacaaatctggaagtgagcccactgagatgtc 153
           |||||||||||||||||||||||||||||||||
Sbjct: 233 gtacaaatctggaagtgagcccactgagatgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 553
Length adjustment: 8
Effective length of query: 145
Effective length of database: 545
Effective search space:    79025
Effective search space used:    79025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)