BAC Information

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BAC

Clone NameMSMg01-429K17
Chromosome15 (Build37)
Map Location 36,499,036 - 36,499,574
singlet/doubletsinglet
Overlap genenone
Upstream geneVps13b, EG666183, Cox6c, Rgs22, Fbxo43, 1700074I03Rik, Polr2k, Spag1, Rnf19, LOC670773, EG268795, EG545101, Ankrd46, 4631426E05Rik
Downstream genePabpc1, LOC626746, Ywhaz, Zfp706, LOC670911, LOC667492, LOC100041288, Grhl2, Ncald, LOC667498, 4930447A16Rik, LOC100041313
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429K17.T7 (MSMg01no429_k17.b1)MSMg01-429K17.TJ (MSMg01no429_k17.g1)
ACCAG522343AG522344
length732766
length of high quality
(start - end)
542 (40 - 581)202 (71 - 272)
definitionCHROMAT_FILE: MSMg01no429_k17.b1 PHD_FILE: MSMg01no429_k17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:13 2005CHROMAT_FILE: MSMg01no429_k17.g1 PHD_FILE: MSMg01no429_k17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTCCTTCTCTGGAACCTGAATAGTAGAAGAGGAAAAGTCCCCATGGTAGA
ATGGTGTTGGCGGCACTGTGCTGCGTCACACGAGGCGCCTACACTTTACT
TGAGAAATGAACATCCACGCAGCGGTTCTAGAATCTCACCGATGGTCACA
CGGCTTTAGTGGAGGGGATATCTGGAAGACTTAGAAACACATTACATGAA
CTTGTCTTCAGCTAGAGATGCTGTGCAGCACACTGACCACCGCCAAGCCT
CTGCTCTCTCATTTAAAGACAGTCTTAGGGCTTTACTGCTGTGAGCAGAC
ACCATGACCAAGGCCACTCTTATAAGGAAAACATTTAATTAGGGCTGGCC
TACAGGTTCAGAAGTTCAGTACATTACTATCAAGATGGGAGTATGGCAGC
ATCCAGACAGGCATGGTGCAGGAGGAGCTGAGAGTTCTACATCTTTCATC
TGAAGGCCACTAGGAAAAGGCTGGCTCCCACATGGTTAGGAGGAGGGTCT
CACTTCCCACCCCCACAGTGACACATTTACTCCAACAAGGTCACACTTCC
TGGGCCAAGCATATTCAAACCACTACTCGGCCCCATAGACATGTTCCAAC
ATATGGATCTGTGGGAGCCATACCTACCTATGCTAGGAAAAAATCACATT
TATTCCCACTTCCCCACGCCCCCATCCTCCGT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTGTGCAAACCAGAGTGGTCTGAAACTCG
GTTTTATCCCTGGCTGACCTCAAACATCAGCGATGGTCCTGCCTCAGCCT
CCCCAGTGCTGGGATCACAAATGTATGTCACCACATCTACTTCAGATTCC
CGAAATGTGAGCCAAGGTGATAAACTATGAATTGGGACCTGAGCTCTCTG
TTGGGGGTGGGGGGGAGGAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNTNNNNNTTNTT
TTTTTTTTTTTTTTTTTTTGGTGGGGGGGGGTTTTTTTTTTGTTTTTTGT
GTTTTTTTTGGCTTTTTCCCTTTTTTTTGTTTTTTTTGGTTTTGTTTTGT
TTTTTTTTTTTTTCTTTTTTTTTTGTTTTGCGCTCTTTTTTTTTCTCCCT
TTCCCTTTTTTCCCCCTTGCCTTTCCTTTTTCTTTTTCCTCTTCCTTTTT
CCCCTCCTTCTCTTCTCCGTTTTCTCCCTTTTCCTTCCGTTTTTCTTTTC
TTTTTTCCCCCTTTTTTTCTCCTTTTTTTTGTTCTCCTTTTCTTTCCCCT
TCTCCCTTTGTCTTTTCCTTTCCCTCCCCCCTTGTCTTCTCCTTTCTTCC
TTCCCCCTCTTTTTTCTTTTCTCCCTTTTTTTTCTCCTCTTCTCGTTTTT
TTCCCCTCTCTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_k17.b1 MSMg01no429_k17.b1 CHROMAT_FILE:
MSMg01no429_k17.b1 PHD_FILE: MSMg01no429_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:13 2005
         (542 letters)



>mm_chr15_36498833_36499774
          Length = 942

 Score =  926 bits (479), Expect = 0.0
 Identities = 524/539 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctccttctctggaacctgaatagtagaagaggaaaagtccccatggtagaat 63
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 204 ggaattctctccaactctggaacctgaatagtagaagaggaaaagtccccatggtagaac 263

                                                                       
Query: 64  ggtgttggcggcactgtgctgcgtcacacgaggcgcctacactttacttgagaaatgaac 123
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggtgttggcggcactgtgctgtgtcacacgaggcgcctacactttacttgagaaatgaac 323

                                                                       
Query: 124 atccacgcagcggttctagaatctcaccgatggtcacacggctttagtggaggggatatc 183
           |||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 324 atccacgctgtggttctagaatctcaccgacggtcacacggctttagtggaggggatatt 383

                                                                       
Query: 184 tggaagacttagaaacacattacatgaacttgtcttcagctagagatgctgtgcagcaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 384 tggaagacttagaaacacattacatgaacttgtcttcagctagagatgctgtgtagcaca 443

                                                                       
Query: 244 ctgaccaccgccaagcctctgctctctcatttaaagacagtcttagggctttactgctgt 303
           ||||||||| || |||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 444 ctgaccaccacccagcctctgctctctcagttaaagacggtcttagggctttactgctgt 503

                                                                       
Query: 304 gagcagacaccatgaccaaggccactcttataaggaaaacatttaattagggctggccta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gagcagacaccatgaccaaggccactcttataaggaaaacatttaattagggctggccta 563

                                                                       
Query: 364 caggttcagaagttcagtacattactatcaagatgggagtatggcagcatccagacaggc 423
           ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 564 caggttcagaagttcagtacattactatcaagacgggagcatggcagcatccagacaggc 623

                                                                       
Query: 424 atggtgcaggaggagctgagagttctacatctttcatctgaaggccactaggaaaaggct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atggtgcaggaggagctgagagttctacatctttcatctgaaggccactaggaaaaggct 683

                                                                      
Query: 484 ggctcccacatggttaggaggagggtctcacttcccacccccacagtgacacatttact 542
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggctcccacatggttaggaggagggtctcacttcccacccccacagtgacacatttact 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)