BAC Information

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BAC

Clone NameMSMg01-430H14
Chromosome15 (Build37)
Map Location 42,154,772 - 42,155,124
singlet/doubletsinglet
Overlap genenone
Upstream geneOxr1, Abra, EG432946, LOC432947, LOC100039268
Downstream geneLOC100039197, Angpt1, Rspo2, LOC675960, Eif3s6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430H14.T7 (MSMg01no430_h14.b1)MSMg01-430H14.TJ (MSMg01no430_h14.g1)
ACCAG522960AG522961
length778900
length of high quality
(start - end)
371 (70 - 440)50 (77 - 126)
definitionCHROMAT_FILE: MSMg01no430_h14.b1 PHD_FILE: MSMg01no430_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:20 2005CHROMAT_FILE: MSMg01no430_h14.g1 PHD_FILE: MSMg01no430_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGC
GGAATTCCAATTATTACGGTGAGAGCAATTCCTTCTCTAACTAGCCTGTC
AGTCACTGAAAACATGCATATTGATAATCTCTGTGTTCCAGGAAAAGTGG
GAATTCTTCACTATATTGTAGACCATTTCCTTGTATCTGTTTCCCCTGGA
ACATGGCCCACTTTTATGCTGCTTACTCTTTTCAAATTTAGCAGTGGCTG
CTGAGTGCACCTCCCTACATGAATACTTGCTCACTCTTTGAGGCCAGCCT
TGGCTACATATGCAAGTTTGATTTCTTTTTGAGTGATAGGAGATTGTTTC
TCTCCATCTTATATATAAATTGCATACATAACCATACCTTTAATGTATCA
AATACTCCAAATGTTTCTATTGACTTTCAATGTGAAACCACAAAATTTAA
AAATTGTTTAAAATTAACACATAATTACTTCATTTTTTTTCCCCCTTCCA
TTCCTAATACCCCACTTCTCTCCCTCTCTCTCTCTCTTTTCAAATTTGAT
CTCTGTACTTTCTTTCTCCGTTGCTGCTATATATTTTATCTACGCTCCCC
CATCCCTTCTCCCTTTTCCTCTTCTCATCTTTTTTATTCTCTTTCTTTTA
TCTTTCCTCTTTTCTTTTTTTCTCACTCTTCTTCTTCACAATATCACATT
TTTTTCCCTTCCATTACTCTTCTTTACATATTACGTATTCCTTTCATAAA
TTTTTTTTGATACCATTCTCCTCTTTTG
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTGTAATGGAGAAAATGGTTA
TTTAGAGTTTATCAAATATTACAGAAGTGTAGTGCTTGAGGTGGCTCTTT
GAAGGAGGCTATATCATTTACCTTTAGGTGACCTACCCACACTCCCTTCT
TATCCGTGTTTCCTTCGCCTACCTGTTCTCCCTTCATGCTCCTAGCTTCT
CTCGCTTTCTTTTTTTTCCACGCTACGAGCTCTTTCTCCCGCTTCATCTC
TCCCCTCTCCGTTCTCTTCCGCCTTCCTCAACTTTTTTTTTTTTTCTACC
TTCTTCCCACCCTACCCCCTCACCCCCTTTATTTCCTCTTCTCGGTTCCA
TTATCCCCCCTTTTTTCTTTCCTCCCCTTTCCATACCCTCCCTCCTCCTC
CTTTACATCTCCCATATCCTCCCATTAATCCCCCCTTCTCCTTCCTTCTC
TCCCCTTCCCTTTATTCCCCCATCCACCTACTCTTCCCACCCTTTCGCAC
TTCTCCTCCTACCTTTTCCTTCTTTTTCCCCCTTCCTCTCCCCTTCTATT
CCCCTCTTTTTACCCCCCTCCCCCCTCCTTTTTTCCTTCTCCCCCTCCTC
CTCCCCCTTACTTCCTCCCTCCCCCCATTCCTTATTCCTCCCTATCTCCC
TCATCCCTTCCCCCTCCCCCCCTCAATCCTCCCCTTTCCATCCCTCTCCT
CCCGTCCCCCCCCTCTTCGCCCTTTCCTACCTCTCTTCCTATACCCCCCC
TCCCACATATTCCCCCTCTTTCCATTCCTCCCCACCTATTTCCTCCCTTA
CCGTTCCCCCCTCCATCCCTCCCTCCCAATCTACCTCCCCCCTCCTCCTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_h14.b1 MSMg01no430_h14.b1 CHROMAT_FILE:
MSMg01no430_h14.b1 PHD_FILE: MSMg01no430_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:20 2005
         (371 letters)



>mm_chr15_42154554_42155324
          Length = 771

 Score =  582 bits (301), Expect = e-170
 Identities = 345/371 (92%), Gaps = 18/371 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagagcaattccttctctaactagcctgtcagtcactgaaaacatgcatattgataatc 60
           |||||||||||||||||||||||||||||||||||||                  |||||
Sbjct: 219 tgagagcaattccttctctaactagcctgtcagtcac------------------taatc 260

                                                                       
Query: 61  tctgtgttccaggaaaagtgggaattcttcactatattgtagaccatttccttgtatctg 120
           ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct: 261 tctgtattccaggaaaagtgggacttcttcactatattgtagaccatttccttgtatctc 320

                                                                       
Query: 121 tttcccctggaacatggcccacttttatgctgcttactcttttcaaatttagcagtggct 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcccctggaacatgacccacttttatgctgcttactcttttcaaatttagcagtggct 380

                                                                       
Query: 181 gctgagtgcacctccctacatgaatacttgctcactctttgaggccagccttggctacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgagtgcacctccctacatgaatacttgctcactctttgaggccagccttggctacat 440

                                                                       
Query: 241 atgcaagtttgatttctttttgagtgataggagattgtttctctccatcttatatataaa 300
           ||||||||||||  ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgcaagtttgaagtcagtttgagtgataggagattgtttctctccatcttatatataaa 500

                                                                       
Query: 301 ttgcatacataaccatacctttaatgtatcaaatactccaaatgtttctattgactttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgcatacataaccatacctttaatgtatcaaatactccaaatgtttctattgactttca 560

                      
Query: 361 atgtgaaacca 371
           |||||||||||
Sbjct: 561 atgtgaaacca 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)