BAC Information

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BAC

Clone NameMSMg01-431A03
Chromosome15 (Build37)
Map Location 51,735,031 - 51,735,375
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik
Downstream geneRad21, Aard, LOC100039720, LOC665219, Slc30a8, LOC100039748, Thrap6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431A03.T7 (MSMg01no431_a03.b1)MSMg01-431A03.TJ (MSMg01no431_a03.g1)
ACCAG523366AG523367
length720732
length of high quality
(start - end)
592 (44 - 635)341 (76 - 416)
definitionCHROMAT_FILE: MSMg01no431_a03.b1 PHD_FILE: MSMg01no431_a03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:08 2005CHROMAT_FILE: MSMg01no431_a03.g1 PHD_FILE: MSMg01no431_a03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAAGCCCATTGTCGCTCAAGGACTATCTAGGGCATTGGTGAAGGCCA
GGAAGCAAAGTTCGATTTTCCTTAGGTATTTGGCAAGTCATTGCTTGGAG
GCACCTATAATAAAACAATACTGAAAGAAAGTACACAGATCCATTCACAA
GGACAAGTTTGGAGCATTCCTTATACGGGATGCCACAGTTCCAGGAGACT
AAGTTTCTGTGAAACTCTTTGCCTCAAGACTGCTTAAAAGTTTCTAAGCC
TGTCAAGCAAGTCACTACTGGAGTGTATGTAGCACAGATCTTTCACTTCC
TTGGTTAGAATTACACCAAGGTATTTTATATTATTTGTGACTATTGTGAA
GTGTGTTGTTTCCCTAATTTCTTTCTCAGCCTGTTTATCTTTTGAGTAGA
GGAAGACTACTGATTTGTTTGAGTTTATTTTATATCCAGCCACTTTGCTG
AAGTTGTTTACCAGCTTTAGTTCTCTGGTGAAATTTTTGGGGCCACTTAA
GTACATAATCATATTATCCGCAAATAGTAATATTTTAATTTCTTCCATTC
TAATTTTTAATCCCTTTGACCTCCTTTTGACGTCTAATTGCCCTAGCTAA
TACTTCAAGTACTATGTTGACTATGTAAGGAGAGAGAGTGTGCAGCCTTG
TCTCTTGGTTTTAGACAAGG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGGAGAAGTGGGTGATCTGACTT
ATCTTGATTGGTTGGCTCTATTTCCAGGGCTATGGGCATCTTTGGAATTG
GTCAAAGCTTTGGGGGAGTCTTGGGGAATTATCATTCTTAACTACTCTTG
GCTCAGGCTAGGTGGTGTGGCTGTTCTTGGCAGATCCTGATTGGCCACCC
AAAAGGCATTTTTTTTCTTCCTGGAATTTGATTTGTTTTGGATTTATCCC
AGTATTAGGAAACAGAAATTTAGGACTAGTCCTTAAACTACCAGCTTGGA
GCCTGCCATGGAGTCTGCCCGGCTTAGCCCCTGGCCTTCTCAGAAGAGGG
TTTTTCAAGGGTGTAACTGAGCAAGAGTTCTTGATAAGTAGAGGCAGGAT
GTTCTACTTATAGGGAACAGCCCAACCGCCAGTACCTATGTTCTGAGGAT
GGAAACACCTACCTTTGCTTTAATGGTCTACCGGGTTTCGGATGTTACAA
ATGGTCAATTAGTGTTCCGCCCTTTTCCTTTTTCCCTTTTCTCTCTCCTC
GTTTCTCCCTCCTAGATACAACACCCCCCCGTTCTTTCCTTCCTCATCCT
TTTCCTTCTTTTTCTCCCTTTTTTCCCCCTATTTACCCCCTTACCTCTTA
CTCCCTCTTCTTCTCTCCGCCCATCTATTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_a03.g1 MSMg01no431_a03.g1 CHROMAT_FILE:
MSMg01no431_a03.g1 PHD_FILE: MSMg01no431_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:08 2005
         (341 letters)



>mm_chr15_51734831_51735575
          Length = 745

 Score =  572 bits (296), Expect = e-168
 Identities = 332/346 (95%), Gaps = 6/346 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggagaagtgggtgatctgacttatcttgattggttggctctatttccagggctatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggagaagtgggtgatctgacttatcttgattggttggctctatttccagggctatgg 260

                                                                       
Query: 61  gcatctttggaattggtcaaagctttgggggagtcttggggaattatcattc----ttaa 116
            ||||||||| ||||||||||||||||||||||||||||||||||| |||||    ||| 
Sbjct: 261 acatctttgggattggtcaaagctttgggggagtcttggggaattaccattcttgattag 320

                                                                       
Query: 117 ctactcttggctcaggctaggtggtgtggctgttcttggcagatcctgattggccaccca 176
           ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 321 ctactcttggctcaggctaggtggtgtggctattcttgggagatcctgattggccaccca 380

                                                                       
Query: 177 aaaggcatttttt-ttcttcctggaatttgatttgttttggatttatcccagtattagga 235
           |||||||| |||| || |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 aaaggcatgttttctt-ttcctggaatttgatttgttttggatttgtcccagtattagga 439

                                                                       
Query: 236 aacagaaatttaggactagtccttaaactaccagcttggagcctgccatggagtctgccc 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aacagaaatttaggactagtccttaaactaccagcttggagcctgccatggagtctgccc 499

                                                         
Query: 296 ggcttagcccctggccttctcagaagagggtttttcaagggtgtaa 341
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggcttagcccctggccttctcagaagagggtttttcaagggtgtaa 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 745
Length adjustment: 9
Effective length of query: 332
Effective length of database: 736
Effective search space:   244352
Effective search space used:   244352
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)