BAC Information

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BAC

Clone NameMSMg01-432H10
Chromosome15 (Build37)
Map Location 61,566,892 - 61,567,333
singlet/doubletsinglet
Overlap genenone
Upstream geneEG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg, LOC100040323
Downstream geneMyc, Pvt1, LOC100040584, H2afy3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432H10.T7 (MSMg01no432_h10.b1)MSMg01-432H10.TJ (MSMg01no432_h10.g1)
ACCAG524476AG524477
length801813
length of high quality
(start - end)		442 (64 - 505)272 (69 - 340)
definitionCHROMAT_FILE: MSMg01no432_h10.b1 PHD_FILE: MSMg01no432_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:11 2005CHROMAT_FILE: MSMg01no432_h10.g1 PHD_FILE: MSMg01no432_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGGAATTCAC
TCTGATCTCCTATCCAAATCTGTGCTTGTCTCCCCTCGATAGTGACATCT
GTCAAATAATGCTTACCCCACTGGCCTCCCTCTGCTCCCTACAAATAACC
TGTGTTGTACTTTATGAGCAAAGCAAGTTGTGGTCCAATGTGACTCATTG
GCAGCAGCCGGAAACTGGTACTTGAAAAGTCTTATAAAAGTCAGTCTGGC
ATGGTGCCTTCCTCATTACTGCACTCAGAATAATTAAAACAGCCCTTTGT
CTGTGGAAACTAACATCTTATGTCCTGACAAAGAGTATCTCTGGTGGGAA
CTATGATTATCACTGTTTTATGGCTGGGGAAACTGAGGAATGGATTTGTT
AAGTGGCTTGCCCCAGGTCCACTGGTGGATCAGGGGCCTGAGACTACAGC
AACTTCTTCCATCACAGTTCTCGTCTTGGTCCAGAATGCTAGCCACATTC
ATTAGCCTAATATTACCATTTCCTGAGCAAAAATTATAGGATTAAGCCAA
TTCAAATCATATCATCTGTACAACTGCGATGGGATAGGTTATGGTCTCTT
CTGGGAATCATGTCCTCTAGGCTGAAGGTTTTATATTAACCTTCTCGACA
AGACCCCTGTAAATAAATTTCTTATATGAATAAGATTCTTACTTTCTTTC
CCAACTTTATTTTTTCCCAATAAATCCCCTGCGTCTGTGCTTTATTTAAG
CCTTTTTATTCTTCCTCTACCTCTCTTTTTTCTTCCTTTCCAATCAACTC
T

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTAATGGGG
CTATTTGATTTTCTGGAGTCCAGCTTCTTGAGTTCTTTATATATATTGGA
TATTAGTCCCCTATCTGATTTAGGATTGGTAAAGATCCTTTCCCAATCTG
TTAGTGGCCTTTTGTCTTATTGATGGTGTCTTTTGCCTTACAGAAGCTTT
GCAATTTTACGAGGTCCCATTTGTCAATTCAGAGATCAGAAAGATCAGAG
GTGTGACTGTGAGGGCTGTTGGAGGGTGGGTGAGGAGGNNTNNNNNNNNN
NNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTNTTGTTTTT
TTTTTTTTNNTTNNTTTTTTTTTTTTNNTTTTTTTTTTTTTNTTTTTTTT
TTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
NTTNTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTT
TTNTNNTTTTTTNNTTTTTTTTNTNTNNTTTNTNTTTNNTTTTTTTTTTN
TTNNNTTTTTTTTTTTTTTTTTTTTTNTTTTNTTNTTTTNTTTTTTTTTT
TTTTTTTTTNTTTTTTNNNTTTTTTTTTTTTTTTTTGTTNTNNTTNNTGN
TTNNTTGGTTNTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_h10.b1 MSMg01no432_h10.b1 CHROMAT_FILE:
MSMg01no432_h10.b1 PHD_FILE: MSMg01no432_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:11 2005
         (442 letters)



>mm_chr15_61566883_61567724
          Length = 842

 Score =  808 bits (418), Expect = 0.0
 Identities = 436/442 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaaatctgtgcttgtctcccctcgatagtgacatctgtcaaataatgcttaccccactg 60
           |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 451 ccaaatctgtgcttgtcttccctcaatagtgacatctgtcaaataatgcttaccccactg 392

                                                                       
Query: 61  gcctccctctgctccctacaaataacctgtgttgtactttatgagcaaagcaagttgtgg 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 391 gcctccctctgctccctacaaatgacctgtgttgtactttatgagcaaagcaagttgtgg 332

                                                                       
Query: 121 tccaatgtgactcattggcagcagccggaaactggtacttgaaaagtcttataaaagtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tccaatgtgactcattggcagcagccggaaactggtacttgaaaagtcttataaaagtca 272

                                                                       
Query: 181 gtctggcatggtgccttcctcattactgcactcagaataattaaaacagccctttgtctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gtctggcatggtgccttcctcattactgcactcagaataattaaaacagccctttgtctg 212

                                                                       
Query: 241 tggaaactaacatcttatgtcctgacaaagagtatctctggtgggaactatgattatcac 300
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tggaaactaacatcaaaggtcctgacaaagagtatctctggtgggaactatgattatcac 152

                                                                       
Query: 301 tgttttatggctggggaaactgaggaatggatttgttaagtggcttgccccaggtccact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 tgttttatggctggggaaactgaggaatggatttgttaagtggcttgccccaggtccact 92

                                                                       
Query: 361 ggtggatcaggggcctgagactacagcaacttcttccatcacagttctcgtcttggtcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  ggtggatcaggggcctgagactacagcaacttcttccatcacagttctcgtcttggtcca 32

                                 
Query: 421 gaatgctagccacattcattag 442
           ||||||||||||||||||||||
Sbjct: 31  gaatgctagccacattcattag 10


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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