BAC Information

Click to search

BAC

Clone NameMSMg01-432I01
Chromosome15 (Build37)
Map Location 16,755,440 - 16,755,962
singlet/doubletsinglet
Overlap geneCdh9
Upstream geneEG239341, LOC100040087, LOC624183, LOC100040119
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432I01.T7 (MSMg01no432_i01.b1)MSMg01-432I01.TJ (MSMg01no432_i01.g1)
ACCAG524506AG524507
length784755
length of high quality
(start - end)
546 (40 - 585)524 (71 - 594)
definitionCHROMAT_FILE: MSMg01no432_i01.b1 PHD_FILE: MSMg01no432_i01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:15 2005CHROMAT_FILE: MSMg01no432_i01.g1 PHD_FILE: MSMg01no432_i01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTC
AAGGCCCATACCTAAACATAGTAAAATTAATATACAGCAAACCAGTAGCC
AACATCAAACTAAATCAAGAGAAACTTGAAAGAATCACACTAAAATCAGG
GACTAGAAAAGACTGCCTACACTCACATCTAATCAGTCTGGTAGTTCCTC
AGAAAATTGGACATAGTACTACCTGAGTACCCAGCTATCAGACTCCTGGA
CATTGACCTAAAAGATGCTCCAATATATTAACAAGGACACATGCTCCACC
ATGTTCTTAGAAACCTTAATTATAGTAGCCAGAAGATGGAAGCAACCCAG
ATATCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAA
TGGAGTACTACCCAGCCATTAAAAACAATGACCTCATGAAATTTGCAGGC
AAGTGGACAGAACTAGAAAATATCATCCTGAGTGAGGTAACTCAGCCACA
AAAAAACATACATGATATGCACTCACTGAGAAGTGGATATTAGCCAAAAA
GCTCAGAATACCTACGATACCACTCACAAACCATAAGAAGCCAAGAAGGA
AGACCAAAGTGTGGATGTTTTAGTCATACTTAGAATGTGGGACAAAATAA
TCCGTGTCTTTTTCATTTGCACGCGCACCACCATCTATGGAGAATAGAAT
AGGGGTCAATTAGCCTGCTAGCTGGAATAACAGGGGGGTGGGTTCAGGTT
TTAATTACNCATTAATTATACCTTAACTTCCGGG
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTTGTATTAAAACTTAATCCTCAGGGCCC
ATGCAGGACATATGCCTTTAGGCCACATATCAGAGATCCAGTAAGTGACA
AGACGAAAATTAGAACTAGCTAGTCTGACTAAAGGTCAACAGTTCTCTGT
GATTTTCCCAACAGACTGCTTAGTTAGGTTTGTCTTCTTGATTCCATGGA
CAGTGAGCCTTTTTCAAAGAGTCTCAATTGGCACAGGAAAGAATTAGAAT
GCTAGCTTGCAATTTTATGCTGTGTGTAGGAACTGATAAGTTCTTTCTGA
ATACAGGTCAGATCATATTTATGAATTGCAAAAGACATGTTTATCAACCC
CAAATATAACAAAATAGCAAGTAGCCTGAAGGAGAATTAATACAAATATA
GAAACTTAATATTTGACAAATATTAAGAATTGAATCATTGAAGGTTTTTA
AAATAACATTTAAAGGTATTTATTTGCCTTTAAATTGTTTTATATTAAAT
AAATAATGATAAGATAAATGCTTATATTTAATATGAGAAAGAAAGCACCT
GCATTGAGCAGATATGTGATAAGAATGTAATGCAATGATGGGATAGTAGC
ACATTAACTATTTCAGAATTTTTTCCCAAAGAGTTAGTGAGCCGTATTCC
GCAAAACTATTCTCTTTTTTGTATGGGAAAATCCTCTTTTCATAATATCT
CAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_i01.g1 MSMg01no432_i01.g1 CHROMAT_FILE:
MSMg01no432_i01.g1 PHD_FILE: MSMg01no432_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:15 2005
         (524 letters)



>mm_chr15_16755305_16756228
          Length = 924

 Score =  988 bits (511), Expect = 0.0
 Identities = 520/523 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttgtattaaaacttaatcctcagggcccatgcaggacatatgcctttaggccacatat 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 658 atttgtattaaaacttaatcctcacggcccatgcaggacatatgcctttaggccacatat 599

                                                                       
Query: 61  cagagatccagtaagtgacaagacgaaaattagaactagctagtctgactaaaggtcaac 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cggagatccagtaagtgacaagacgaaaattagaactagctagtctgactaaaggtcaac 539

                                                                       
Query: 121 agttctctgtgattttcccaacagactgcttagttaggtttgtcttcttgattccatgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 agttctctgtgattttcccaacagactgcttagttaggtttgtcttcttgattccatgga 479

                                                                       
Query: 181 cagtgagcctttttcaaagagtctcaattggcacaggaaagaattagaatgctagcttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cagtgagcctttttcaaagagtctcaattggcacaggaaagaattagaatgctagcttgc 419

                                                                       
Query: 241 aattttatgctgtgtgtaggaactgataagttctttctgaatacaggtcagatcatattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aattttatgctgtgtgtaggaactgataagttctttctgaatacaggtcagatcatattt 359

                                                                       
Query: 301 atgaattgcaaaagacatgtttatcaaccccaaatataacaaaatagcaagtagcctgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 atgaattgcaaaagacatgtttatcaaccccaaatataacaaaatagcaagtagcctgaa 299

                                                                       
Query: 361 ggagaattaatacaaatatagaaacttaatatttgacaaatattaagaattgaatcattg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ggagaattaatacaaatatagaaacttaatatttgacaaatattaagaattgaatcattg 239

                                                                       
Query: 421 aaggtttttaaaataacatttaaaggtatttatttgcctttaaattgttttatattaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 aaggtttttaaaataacatttaaaggtatttatttgcctttaaattgttttatattaaat 179

                                                      
Query: 481 aaataatgataagataaatgcttatatttaatatgagaaagaa 523
           |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 178 aaataatgataaaataaatgcttatatttaatatgagaaagaa 136


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)