BAC Information

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BAC

Clone NameMSMg01-432K05
Chromosome15 (Build37)
Map Location 15,666,944 - 15,667,392
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040024, LOC100040033, LOC100040046
Downstream geneEG239341, LOC100040087, LOC624183, LOC100040119
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432K05.T7 (MSMg01no432_k05.b1)MSMg01-432K05.TJ (MSMg01no432_k05.g1)
ACCAG524608AG524609
length782795
length of high quality
(start - end)
464 (39 - 502)449 (67 - 515)
definitionCHROMAT_FILE: MSMg01no432_k05.b1 PHD_FILE: MSMg01no432_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:26 2005CHROMAT_FILE: MSMg01no432_k05.g1 PHD_FILE: MSMg01no432_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCAT
CAATTTGCATTCCTTTACATGCTAACCACCAGGTGAGCCAGCACCATTTG
TTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCTCTTATCAAA
TACCAAGTGACCATAATTGTGTGGATTCATTTCTGGGTCTTCAGTTCTAT
TCCATTGATCTTACCTGTCTGTCATTGTACCAAAACCATGCAGTTTTTAT
CACATATGTTCTGTAGTACAGCTTGAGGTCAGGGATGGTGATAAAAACTG
CATGGTACTGATACAGTGTCAGACAGGATATTTTTTTTTATTTACATTTT
AATTCTTTTCCCCTTTCCAGGTCTCCCCTTCAGAAACCCCTTGCCCATAC
TCCTCCCCCCAGCCTCTATGAGGGTGTTTCCTGCTCTCCCACCAACACCT
GTCTTCACTCCCTGGAACTGCCCTACACTGGGTCACTGAACACCCATAAG
CTCAAGATCCATTCCTCCCACTGATGTCTGGGTTTGGTGACTGCATATGT
GATGGAATTCTTAGTGTTTTACTCTTCTGTAACTTCTTTTCCTACTTCCC
TCCCCTTTATTTATTTTCCAATTATTCTCCTCTTACCAATTTTTCACTCC
TTTTTTATTACTCTTCTTTTTCCCTTTTTCACCTCTTTTCCTTCTTTTTT
CTTTTCCATTCATCCTTTTTCTTTTCTTCCTCCTATCCTCTCTTTCTTCT
TTTTTTTCACTTTCTTTCTTTATTCTCCCCTG
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGTAACATATAAACAAAGAATGATATTTGAGAGT
TGATTAGAAAAGATTGCATTTGTTAAAATATTGATAACTAATGAGGACAA
GAGATTTATACTGCAAAGTTGAGAAGAAAAATCCATGTTAGAAAAGAATG
TCCACCTCATAATTAACATTATTGACAAATATACATAGATTAGCTGCATT
GGTCACATAAGCATTCTCATTGCTCTGTAGGTTTTGTCATCTTTCTGATG
CTACTGAGCTTGGATAGGATGAGAGAATGAAACTTGATGAAAATCTAAGT
TAAATCTTATTTTATTCTCAAGTACTGATTAAGTATCTTGAGTGACTTCA
TTCATTAGTTACTTAAAAAATGTTTCATTCTTCATTTCTTTAAAAAGAAA
ATAGTCCCAGTTTAAGACAGGAATGTTCTAAAAATTTTATTCATGATGAC
AGAGTTAAAGAAGAGATAACTGTGTTTAACTTTTTCCCATCTTAAAAATC
AAACTTTATACCTAAGTCTATTAGTGTTTGGACAGACCTCCTTCTGTTGT
ATGAAAGAACTCCTTTTATATATGCCTAGATCTTGATTTCTTTGTCTGGT
TCCAAGCCTTTTTGTTAATTATGTTATCTTTAATGGGTTTTTCTTATGCC
CTAAATTTCTCTCTGCTTTTATTCCCCTCATCTATATGTTAGGTAGTTTC
TATTATCTTTTATTGCCCCGCTCCTGTTTCGTCCTCATCTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_k05.g1 MSMg01no432_k05.g1 CHROMAT_FILE:
MSMg01no432_k05.g1 PHD_FILE: MSMg01no432_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:26 2005
         (449 letters)



>mm_chr15_15666744_15667592
          Length = 849

 Score =  861 bits (445), Expect = 0.0
 Identities = 448/449 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaacatataaacaaagaatgatatttgagagttgattagaaaagattgcatttgttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaacatataaacaaagaatgatatttgagagttgattagaaaagattgcatttgttaa 260

                                                                       
Query: 61  aatattgataactaatgaggacaagagatttatactgcaaagttgagaagaaaaatccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatattgataactaatgaggacaagagatttatactgcaaagttgagaagaaaaatccat 320

                                                                       
Query: 121 gttagaaaagaatgtccacctcataattaacattattgacaaatatacatagattagctg 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 gttagaaaagaatgtccacctcataattaacattattgacaaatatgcatagattagctg 380

                                                                       
Query: 181 cattggtcacataagcattctcattgctctgtaggttttgtcatctttctgatgctactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattggtcacataagcattctcattgctctgtaggttttgtcatctttctgatgctactg 440

                                                                       
Query: 241 agcttggataggatgagagaatgaaacttgatgaaaatctaagttaaatcttattttatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcttggataggatgagagaatgaaacttgatgaaaatctaagttaaatcttattttatt 500

                                                                       
Query: 301 ctcaagtactgattaagtatcttgagtgacttcattcattagttacttaaaaaatgtttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcaagtactgattaagtatcttgagtgacttcattcattagttacttaaaaaatgtttc 560

                                                                       
Query: 361 attcttcatttctttaaaaagaaaatagtcccagtttaagacaggaatgttctaaaaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attcttcatttctttaaaaagaaaatagtcccagtttaagacaggaatgttctaaaaatt 620

                                        
Query: 421 ttattcatgatgacagagttaaagaagag 449
           |||||||||||||||||||||||||||||
Sbjct: 621 ttattcatgatgacagagttaaagaagag 649


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)