BAC Information

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BAC

Clone NameMSMg01-433C11
Chromosome15 (Build37)
Map Location 20,151,072 - 20,151,613
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666875, LOC621884, LOC100040265
Downstream geneAcot10, LOC100040302, Cdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433C11.T7 (MSMg01no433_c11.b1)MSMg01-433C11.TJ (MSMg01no433_c11.g1)
ACCAG525002AG525003
length709721
length of high quality
(start - end)
234 (307 - 540)543 (67 - 609)
definitionCHROMAT_FILE: MSMg01no433_c11.b1 PHD_FILE: MSMg01no433_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:09 2005CHROMAT_FILE: MSMg01no433_c11.g1 PHD_FILE: MSMg01no433_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCGCTATACGACTCCTTTTCCCAGAGGATCCGCGGATTCTACCTTT
CCAGAACAATTTAGATTTCATACTACTACATGTTTAAAAAATAGTCAAAT
TATTTTGCCTTTAGATTAAAAACAATTTACAGAATGTTTTTATTATTTAA
TCATAATTTTATCTTTGTGATATTTGGCAAACTTTACTTTCAATATGATA
GTTTATAACATAATAATTAAAAAAAAACCCTGATCACAAGACATCTTGGA
TTCTGGACTCCACCGAGACTACTCTGCACAGGTGAGAGGGTGGACTACTT
TTTTTAACAGCTTCTGGGACAGGCCCTGTTTCGGGCCTTCATCTTCTGAC
AGGAGGTAAGTCTGAACGCCACATATCTGTGCACCTTCCCTGAAAGAGGA
GAGCCTGCCTGCAGAGAGTGCTCTGACCACTGAAACTCANGAGAGAGCTA
GTCTCCCCTGTCTGCTGGTAGACAATAACAGAATCATGAGAGTATCAAGA
TCTAACCAGATACAACTATAACAACTGACTCCAGAGTTTACCAGATGGTG
AAAGTCAGACTTAAGAATCTTACTAACAAAAACCAATACCACTCACCATC
ATCAGAACCCAGTACTCCAACCTCAGCCAGTCCAGGGCACCCCAACACAC
CCGAAAATATACACCAGGATTTAAAGGCATATCTCATGATGATGGTAGAA
GACATCAAG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACACCTAATCACTGCCCATCTCGGGGCATAGTAA
TGGGGTGATGGGCGAGCAACAAATCATGAGCTGTCACGCCACATCAGGTG
CTGAAACGTCACGCTGCGGGCTATATAAGCAGCTCCATTTTCTGGATTCT
GGGTCTTCCTCCTGAGAAGTAAGCAATAAAGCCTTTTGCCGCAGAAGATT
CAGGTTTTCCTGAGTGTGTTCTTGCCGGCGGGGACAAAAGCTCCGGATAC
ATGACAACCATTTTAGACTTGTCTTCCATGTTACATATTAGGAAGATAAT
GATAAGGTTACTGGACTTGAAAACTAAGTTTCGTCTATGCAAGTTACAAC
TGACATGAAACATATGGTAGAAGAATTTACATATATAAACTTAAGTGATT
CTATTTTTTGGCTATTGTTTTAAATAAAATAAACACTTGGTGATCATGAA
ATCTGCAATGTACATTTCTCTTCAGATCAATTAAAGGGCATGCTTATAAT
AAAAGGTAATGTAACTATTTCATTTAAAGCATATATTGCCATATTAACTA
TCAATCTACAGGAAAATGTGGATTAAAAGGAGATCTAACTGAACGATGAT
AAGTGTGAATTGTTTAAAGAAAAACAAATATTGGTGGCATATAGAAAGAT
GGCGACTTATTCGCAAAAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_c11.g1 MSMg01no433_c11.g1 CHROMAT_FILE:
MSMg01no433_c11.g1 PHD_FILE: MSMg01no433_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:10 2005
         (543 letters)



>mm_chr15_20150871_20151813
          Length = 943

 Score =  988 bits (511), Expect = 0.0
 Identities = 535/543 (98%), Gaps = 1/543 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacctaatcactgcccatctcggggcatagtaatggggtgatgggcgagcaacaaatca 60
           |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| 
Sbjct: 202 acacctaatcactg-ccatctccgggcatagtaatggggtgatgggcgagcaacaaatcg 260

                                                                       
Query: 61  tgagctgtcacgccacatcaggtgctgaaacgtcacgctgcgggctatataagcagctcc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tgagctgtcacgccacatcaggtgctgaaacgtcacgctgcgggctatataagcagcttc 320

                                                                       
Query: 121 attttctggattctgggtcttcctcctgagaagtaagcaataaagccttttgccgcagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attttctggattctgggtcttcctcctgagaagtaagcaataaagccttttgccgcagaa 380

                                                                       
Query: 181 gattcaggttttcctgagtgtgttcttgccggcggggacaaaagctccggatacatgaca 240
           ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 gattccggttttcctgagtgtgttcttgccggccgggacaaaagctccggatacatgaca 440

                                                                       
Query: 241 accattttagacttgtcttccatgttacatattaggaagataatgataaggttactggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accattttagacttgtcttccatgttacatattaggaagataatgataaggttactggac 500

                                                                       
Query: 301 ttgaaaactaagtttcgtctatgcaagttacaactgacatgaaacatatggtagaagaat 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgaaaactaagtttcgtctatacaagttacaactgacatgaaacatatggtagaagaat 560

                                                                       
Query: 361 ttacatatataaacttaagtgattctattttttggctattgttttaaataaaataaacac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttacatatataaacttaagtgattctattttttggctattgttttaaataaaataaacac 620

                                                                       
Query: 421 ttggtgatcatgaaatctgcaatgtacatttctcttcagatcaattaaagggcatgctta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttggtgatcatgaaatctgcaatgtacatttctcttcagatcaattaaagggcatgctta 680

                                                                       
Query: 481 taataaaaggtaatgtaactatttcatttaaagcatatattgccatattaactatcaatc 540
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 681 taataaaaggtaatgtaactatttcatttaaagtatatattgccatattaactatcaatc 740

              
Query: 541 tac 543
           |||
Sbjct: 741 tac 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)