BAC Information

Click to search

BAC

Clone NameMSMg01-433J03
Chromosome15 (Build37)
Map Location 63,528,648 - 63,529,070
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040430, Tsg101-ps, EG239502, EG432959
Downstream geneLOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik, Ddef1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433J03.T7 (MSMg01no433_j03.b1)MSMg01-433J03.TJ (MSMg01no433_j03.g1)
ACCAG525322AG525323
length747704
length of high quality
(start - end)
387 (41 - 427)479 (75 - 553)
definitionCHROMAT_FILE: MSMg01no433_j03.b1 PHD_FILE: MSMg01no433_j03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:42 2005CHROMAT_FILE: MSMg01no433_j03.g1 PHD_FILE: MSMg01no433_j03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TAGTGTTGTCATGTGCCAGGAGATGTTGTTGTTATTTTTTTACATCCCAA
GCACAGTTTTCCGTCAAGGCTGAACAAAGCAACCAGTAAGAGGGAAAGGG
TCCCAAAAGCAGGCAAAAGAATCAGAGACAGCCCCTGCTCCCACTGTTAG
GTGTCCCACAAGAAGATGAAGCTATACAATCTTACCATATATGCAGAGGG
CCTAGGTCAGTCCCATGCTGGCCAGGAGATGTCTTTTAATGGATGCATGA
ATGGATGGATGATGGGAAGACAGGAGGATGAATGGGCATTGTCTTAGCTA
GGTTTTCTATTTTTATGATAAAACACCATGAACAAAAACAACATAGGGAG
GAAAGGGCTTGCTCATTTCATTTACAGATCCACGTTAGAGTTTAAAGCTG
AGGAATGTCTTGGTAGGAGTCTGGATGCCGAGACCGATTTTCAAGTTTAT
ATGACAACTGTTTCGCTTCCTAGTGTCATGTCCGCCCGCCTTTCCCGTTT
ATCTATGCCGGTATCGTGTTCCCCTTGCCTCCTCCTCCCCCTTCCTTTTT
TCCCTTCTCCCTTTTTTCCTCTCCGCCCCTATTTCCCCTTCTCTTCTCCT
TCCCTTTTTTCCTCTTCCTTTGTCTGCCCCCATTTTTTCCCCTCTTTCTT
TTTCCCCGCCCCCCGTCTTTTCCTCCCCTCCCCACTACTCTTCTCGG
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGGAAATGCAGAAGCAGAGGGGTTC
CCAGGTAAGGTCTGACTGATGAATTGATTCCATGGTTTAAAAATTTACAT
CTACTCCAGAAAATTGAGAAAAAGGAATTCAAAGGTTAGCCAAGTGCAGT
AACCAGAAATAGTTGGAAAGCAGGTTAAAAATCTTTGTATTTTTAGACTA
TTTCAGGTTATTAGGAAAATGCTAAGGTGATAGAGAACATTTTTTTTTTT
TTACCCTCTATACAACTTCCTCTGTTGTCCGCATCTCGAATACTAAAAGT
ACATTTGTCAAACAAAGGAGTTAAAATAGTATGGAATCATTAGTTAAATG
AGACAATTTGGCTTTCAATAGCTGCCGATATTCTGTTCAGCATCCACCCT
TACTGAGCTTTGCTAGTTTTCTTAGTCTCCTTTGTTCTCTGACAGCTTCT
CATTCGTCCTTCCTTCCTAACATCCATGCAGATTTGAGTTAGACATTCCG
TAGAATGTTCCCTTAGTTTTGAATGTCTGAGGTGTTGTCTCATGATTAAA
CTGGCATTAAGAGTTTTGAGGCAGAATTCTCTTAAGGGTACTGCTCTTTG
AGCCCTGTCTTGGCAGGCCCTCATTGTGTTCCCCCGAATTTATTCCTCGG
TGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_j03.g1 MSMg01no433_j03.g1 CHROMAT_FILE:
MSMg01no433_j03.g1 PHD_FILE: MSMg01no433_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:42 2005
         (479 letters)



>mm_chr15_63528648_63529526
          Length = 879

 Score =  659 bits (341), Expect = 0.0
 Identities = 413/461 (89%), Gaps = 38/461 (8%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaaatgcagaagcagaggggttcccaggtaaggtctgactgatgaattgattccatggtt 63
           ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 423 gaaatgcaggagcagaggggttcccaggtaaggtctggctgatgaattgattccatgatt 364

                                                                       
Query: 64  taaaaatttacatctactccagaaaattgagaaaaaggaattcaaaggttagccaagtgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 taaaaatttacatctactccagaaaattgagaaaaaggaattcaaaggttagccaagtgc 304

                                                                       
Query: 124 agtaaccagaaatagttggaaagcaggttaaaaatctttgtatttttagactatttcagg 183
           ||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||
Sbjct: 303 agtaaccagaaatagttggaaagtaggttaaaaatctttgcatttttaaactatttcagg 244

                                                                       
Query: 184 ttattaggaaaatgctaaggtgatagagaacatttttttttttttaccctctatacaact 243
           ||||||||||||||||||||||||||||||||     ||||||||||||||||       
Sbjct: 243 ttattaggaaaatgctaaggtgatagagaaca-----ttttttttaccctcta------- 196

                                                                       
Query: 244 tcctctgttgtccgcatctcgaatactaaaagtacatttgtcaaacaaaggagttaaaat 303
                                     ||||||||||||||||||||||||||||||||||
Sbjct: 195 --------------------------taaaagtacatttgtcaaacaaaggagttaaaat 162

                                                                       
Query: 304 agtatggaatcattagttaaatgagacaatttggctttcaatagctgccgatattctgtt 363
           ||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 161 agtatggaatcattaattaagtgagactatttggctttcaatagctgccgatattctgtt 102

                                                                       
Query: 364 cagcatccacccttactgagctttgctagttttcttagtctcctttgttctctgacagct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 cagcatccacccttactgagctttgctagttttcttagtctcctttgttctctgacagct 42

                                                    
Query: 424 tctcattcgtccttccttcctaacatccatgcagatttgag 464
           |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 41  tctcattcttccttccttcctaacatccatgcagatttgag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)