BAC Information

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BAC

Clone NameMSMg01-435B07
Chromosome15 (Build37)
Map Location 64,169,525 - 64,268,685
singlet/doubletdoublet
Overlap geneDdef1
Upstream geneEG239502, EG432959, LOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik
Downstream geneAdcy8, LOC268812, LOC100040790, LOC665836
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435B07.T7 (MSMg01no435_b07.b1)MSMg01-435B07.TJ (MSMg01no435_b07.g1)
ACCAG526468AG526469
length766765
length of high quality
(start - end)
473 (44 - 516)359 (75 - 433)
definitionCHROMAT_FILE: MSMg01no435_b07.b1 PHD_FILE: MSMg01no435_b07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:41 2005CHROMAT_FILE: MSMg01no435_b07.g1 PHD_FILE: MSMg01no435_b07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,268,219 - 64,268,685)(64,169,525 - 64,169,883)
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCATCCAGTACCCACTGAATTCATCCAATTCCCTCTGAATTCATTCA
GTTCCCTCTGCCCCACACACTTTTCATGTCATAAGTATCTGTGTATATTT
CAGTATCATGTTCAACATCACTGCTTCCTAGAAACTCTAGAACTGCAGGT
ACTTGCACACTCCAACACACTCTTGTGCCCCAACCCTACCTAGCACCCTC
CTCCCTCAGACTATGAGCCAGGCAAATACTCAGACAGATTCTTGTAGTGA
ATTTTCTTTATTAAATTGGTGAATTCAATTTTATAAGAGTTCTATAATTT
TAAAAATATAGTACAATGCATCTATTACCACTAGTTCCTTTCAGATTATA
ATAACCTGTTAAGAATTAGTCATAAAGCTAGACATGGCTCTTATAGAGGA
CCCAGGTTTGTTCCCAGCATCCATGTGGCAGCTTACACCAGGGCCACCCA
CAGAATTTTGCAAATGGCTCTTCAAGCTACCTCTCTCAATGAGCCTCTAA
AGAGGTCACTCTGGCTAACAAACCAGACTGTACACAGCAAGTGTAGAAAT
TGAGGCTCTTCTCACTTCCACAGGCCCCGTTGGCCCCCAGTATACTTACT
ACTAGGCCTAAACCTTAAATAAAAAGGATCCAATAAAATTCTCTGTAAGC
CTCCTTTCTCCAAGAAAATTTTTTTTTTTCCTGGAACCCCCCATTGTCCA
ATTCCATTTTGTTCTT
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCGCTTGCGGAATCACGCTCGAGGC
TCAAAGGCTCTCCGGTTTTGAAGCTCTGAGTTTGAAATGTCTGGAATGGG
ATGCTTAACCTACATCAAGTTGGAGGGGCCTATGTTCATGTGGCACTTGG
GCTATCAGGTCTAGAAGTTGGAGATATAATGTGGAAGTCACATTGCTACA
GACAACTTCAAAGGCAGGCCAGGATTGGTCAGGACAAGGTGCACTGAGAA
AGAGCACAGGGGAACTAGAGGACATCCAGGTGGGCGTGGACGGTGCAAAC
TCAAGCACCACTGTTCTCAGAGGGACAGCATGGGCAGCTGGGTCAAGCGC
TTGAGCTTGAAAGCTGAGCTGACTGGAAGGTGACAGTCACAAAGGGTATG
AGGTTTACCTTCAAAGGGTTTTCCGTACAGCCTGACCCAAAACGCACAAT
TGCGCGCTCTCAGGGCAATTTGCTAAATATGACTTCCCCTTCGTCCTTCT
ATAAGATTGTGTTCCTTAAACCCCCTTTTTGACCTCCTAGGATTTCTTTC
CCGCCCTGTTTACGCCTTCTCTTTTCCCCTCATGGAGCGTGGCTCCTGCT
CGTCTTCCTTCTTCTTGTTTGTCGACCAGGTGTTGCCCCCGCTGCCCGTA
TTGCTCTTATCCCGCCAAGTAATTTTTTCCTTACCCTTCCTTTCTTCTTT
CCCTCCCCTCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_b07.b1 MSMg01no435_b07.b1 CHROMAT_FILE:
MSMg01no435_b07.b1 PHD_FILE: MSMg01no435_b07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:41 2005
         (473 letters)



>mm_chr15_64268093_64268965
          Length = 873

 Score =  903 bits (467), Expect = 0.0
 Identities = 467/467 (100%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcatccagtacccactgaattcatccaattccctctgaattcattcagttccctct 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gaattcatccagtacccactgaattcatccaattccctctgaattcattcagttccctct 534

                                                                       
Query: 67  gccccacacacttttcatgtcataagtatctgtgtatatttcagtatcatgttcaacatc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gccccacacacttttcatgtcataagtatctgtgtatatttcagtatcatgttcaacatc 474

                                                                       
Query: 127 actgcttcctagaaactctagaactgcaggtacttgcacactccaacacactcttgtgcc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 actgcttcctagaaactctagaactgcaggtacttgcacactccaacacactcttgtgcc 414

                                                                       
Query: 187 ccaaccctacctagcaccctcctccctcagactatgagccaggcaaatactcagacagat 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ccaaccctacctagcaccctcctccctcagactatgagccaggcaaatactcagacagat 354

                                                                       
Query: 247 tcttgtagtgaattttctttattaaattggtgaattcaattttataagagttctataatt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tcttgtagtgaattttctttattaaattggtgaattcaattttataagagttctataatt 294

                                                                       
Query: 307 ttaaaaatatagtacaatgcatctattaccactagttcctttcagattataataacctgt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ttaaaaatatagtacaatgcatctattaccactagttcctttcagattataataacctgt 234

                                                                       
Query: 367 taagaattagtcataaagctagacatggctcttatagaggacccaggtttgttcccagca 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 taagaattagtcataaagctagacatggctcttatagaggacccaggtttgttcccagca 174

                                                          
Query: 427 tccatgtggcagcttacaccagggccacccacagaattttgcaaatg 473
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tccatgtggcagcttacaccagggccacccacagaattttgcaaatg 127


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no435_b07.g1 MSMg01no435_b07.g1 CHROMAT_FILE:
MSMg01no435_b07.g1 PHD_FILE: MSMg01no435_b07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:41 2005
         (359 letters)



>mm_chr15_64169325_64170083
          Length = 759

 Score =  648 bits (335), Expect = 0.0
 Identities = 353/359 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   accgcttgcggaatcacgctcgaggctcaaaggctctccggttttgaagctctgagtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 accgcttgcggaatcacgctcgaggctcaaaggctctccggttttgaagctttgagtttg 260

                                                                       
Query: 61  aaatgtctggaatgggatgcttaacctacatcaagttggaggggcctatgttcatgtggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgtctggaatgggatgcttaacctacatcaagttggaggggcctatgttcatgtggc 320

                                                                       
Query: 121 acttgggctatcaggtctagaagttggagatataatgtggaagtcacattgctacagaca 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttgggctatcaggtctagaacttggagatataatgtggaagtcacattgctacagaca 380

                                                                       
Query: 181 acttcaaaggcaggccaggattggtcaggacaaggtgcactgagaaagagcacaggggaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 acttcaaaggcaggccaggattggtcaggacaaggtgcactgagaaagagcacacgggaa 440

                                                                       
Query: 241 ctagaggacatccaggtgggcgtggacggtgcaaactcaagcaccactgttctcagaggg 300
           ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 441 ctagaggacatccaggtgggcgtggactgtgcaagctcaagcaccactgttctcagaggg 500

                                                                      
Query: 301 acagcatgggcagctgggtcaagcgcttgagcttgaaagctgagctgactggaaggtga 359
           ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 acagcatgggcagctgggtcaagtgcttgagcttgaaagctgagctgactggaaggtga 559


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)