BAC Information

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BAC

Clone NameMSMg01-435N07
Chromosome15 (Build37)
Map Location 11,444,135 - 11,444,467
singlet/doubletsinglet
Overlap genenone
Upstream gene4930401A09Rik, EG666579, Rai14, C1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12, Tars
Downstream geneLOC100039772, Npr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3, Pdzd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435N07.T7 (MSMg01no435_n07.b1)MSMg01-435N07.TJ (MSMg01no435_n07.g1)
ACCAG527043AG527044
length810874
length of high quality
(start - end)
354 (47 - 400)94 (71 - 164)
definitionCHROMAT_FILE: MSMg01no435_n07.b1 PHD_FILE: MSMg01no435_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:43 2005CHROMAT_FILE: MSMg01no435_n07.g1 PHD_FILE: MSMg01no435_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGATCCGCGG
AATTCTAGAATATTCCTGGGAACATAAACAAAATAAGAATCCTCTTAAAC
TAAGCTTAAAACAAACTACATCTGAGCCTTGACATCATGAAAATCACTGT
TTTATCCATTCTCAGGGAAAAAATGATAATCTCATGTTTTCTTGTGTGTG
TATTTTAATTGTCTGATTTTCCATATACTTTGAGAAACATAGTTAATTGT
AGTAGCACATGCCTGTTCTCTGAAGACTTAGGCAAAGAGCGGAGGAGTCT
GGTTGCTAAGTTAATACAGATGAATGCTTTTCCTTCCTCTTGTTCTTGCT
TTTATCGGGTTCTATTGTTACACTCTGTCTTCAAAAGACATTTTCTTCAA
AGCACTTGACATTCATTTTTACAAATTATAATTTCATAAATATTGTAAGT
TTCTTCTAAATCTATTGCCACCGCGAATACTGTACACTGAAATTAATTCT
GATCTCACATAAAACGTTTTTTTTTTTTTTCTCTTTATTTTCCTTTTATA
ATTCTCCCATTATTTTGACCCTCACCTGGTTTGTCATTACATTCCCCCTT
CCCTATTTTTTTATTTACTTTTCCTTTTTTTTTCCCTTTCTTTCTTCCCC
TTTTTTTTTCTTCCCCCCTCTTTTTTTATTCCTTTGCCGTCTTTTTTTCC
ACCCTTTTCTCCCATTTTTCTTTCTCTTATTCCCCTTCTTTCCTTTCCTC
CCTCTTATCTTTCCTTCCCCTTTATTTCTCTCCCTTTTCCTTCCTCTCTC
TTTTTTTTTG
ATATAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATTTCAGGCTCCAGAGGCTGCGAGCCCCT
TATGGGCTCACTGACATCTAANATTGCACAGTTCATGATTCTGCTCTCTA
ATGTAAAATTTACCCTCAGTGAGGTCCTGNGTGACNNATTTCCTCCCCGA
CGGCGGGCGCGCCGGCGAGGGCCGCGGCAGACGTTGGAAGCGGAGCGGAG
NNNNNTNNNNNNCNNNNNAAANTTTTAATATTTTATTTTTTTTCCTTTAT
CCCCCCCNNNTCTCCTTAATATTTTTTAACTTTTTTTTTNTNTNTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNTNNTTTTTTTTTTTTTNT
TNTTTTTTNTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTT
TTTTTTTTTTTTTTTTNTNTTTTTNNNNNNTTTNTNTNTTTTTTNTTTTT
TTTTTTTTTNTTTTNTTTTTTTNTTTTNTTTTTTTTTTTNNTTNTTTTTN
NTTTTTTTTTTTTTTTNTTNTTTCCTTTTTTTCTTTTTTTTTTTTNNTNT
NNTTTTTNTTTTTTTTTTTTTTTTTTTTTTNTTCCNTTTTTCCCTCTTTT
TTTTTTTTTTTTTTTCTTTTTTNTTTNTTTTTTTTTTTTNTNTTCTTTTT
TTTTTTTTTTTTTTTTTTTTTTTNTTCCCCTCTTTTTTTTTTTNTTTCTT
NTTTTTTTTTCNTTTTTTTTTTTTTNTTNCTNTTTTTTTCCTTTNNNCTT
CCTTTNNCCTTTCTTTTTCTTTTCCTTTTCTTTTTCCNTTCTCTTCTTTT
CTCCTCTCCTCCCCCGCGCGCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_n07.b1 MSMg01no435_n07.b1 CHROMAT_FILE:
MSMg01no435_n07.b1 PHD_FILE: MSMg01no435_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:43 2005
         (354 letters)



>mm_chr15_11443915_11444667
          Length = 753

 Score =  638 bits (330), Expect = 0.0
 Identities = 333/334 (99%), Gaps = 1/334 (0%)
 Strand = Plus / Plus

                                                                       
Query: 21  tgggaacataaacaaaataagaatcctcttaaactaagcttaaaacaaactacatctgag 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tgggaacataaacaaaataagaatcctcttaaactaagcttaaaacaaactacatctgag 280

                                                                       
Query: 81  ccttgacatcatgaaaatcactgttttatccattctcagggaaaaaatgataatctcatg 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ccttgacatcatgaaaatcactgttttatccattctcagggaaaaaatgataatctcatg 340

                                                                       
Query: 141 ttttcttgtgtgtgtattttaattgtctgattttccatatactttgagaaacatagttaa 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttttcttgtgtgtgtattttaattgtctgattttccatatactttgagaaacatagttaa 400

                                                                       
Query: 201 ttgtagtagcacatgcctgttctctgaagacttaggcaaagagcggaggagtctggttgc 260
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 401 ttgtagtagcacatgcctgttctctgaagacttaggcaa-gagcggaggagtctggttgc 459

                                                                       
Query: 261 taagttaatacagatgaatgcttttccttcctcttgttcttgcttttatcgggttctatt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 taagttaatacagatgaatgcttttccttcctcttgttcttgcttttatcgggttctatt 519

                                             
Query: 321 gttacactctgtcttcaaaagacattttcttcaa 354
           ||||||||||||||||||||||||||||||||||
Sbjct: 520 gttacactctgtcttcaaaagacattttcttcaa 553


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 753
Length adjustment: 9
Effective length of query: 345
Effective length of database: 744
Effective search space:   256680
Effective search space used:   256680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)