NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCCAGATTTATCTAGGAGTGGGGAGTGAGGCATTGTGTAAT
TCCTTTCTTTAATTTCTTTAGTTAATTTCATATCTTAGTGTTGTCAGTTT
TCAAGGTTTAGGACTGTGATTATTTTTCTGAATTATGTTTCAGCAATTTT
AATGTTACTATAAAAAAGCTACTGATCTTTTAATTTTTAAATCGTTGTAT
ATACACACACACTATATACATATACATATACATATACATATACATATACA
TATACATATACATATACATATACATATACATATACATATACATATACATA
TACATATACATATACATATACATATACATATACATATACATATACACACA
TACATATATACTAGTATACTAGAATAATATTATATATACACATAAGCATA
GTATATATGTGTGTGTGCATGCCTATGTGTATACATGCAACAGTGTTCAC
AACAGAGGCCAAGAGACTATTTAAGTAAGTTCTATCTGTGTAGTTCCTGG
GGATCAAACTCAGGTTTTTAAGTTTGATGGCAAACACCTTTACCAATAAA
CCTTCTCTCCAACCCAAGCTACTTATTTTTGTATGCTAATTTTGTTTCCT
ACTCTACAACAAAAATATTATTTCAGATACCAGAGTTCTAGTAGAATATG
TATGGTCTTGTAAATGTAGAATCACCTAATTTTCAACAGAGATGAATTAA
CTTCTTCCT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAGAAATTCTTCTGCGCTGAAGACTTTTCTAAAAGAA
CGCTCTTTCTCAAAAGTGCTGAGCCCACCAACAAATCAGATCTCCCTCTT
TAATGTTATTCATCAGCTAAAGGAAACAGAGACCCCTTGGAGCAGTCATG
GCTAGATGTACCAGAGCAGAGACTGTGAAGATGCACCTAGAGTGTCACGA
AAAGGTCAGGTGATTGGGGTGGGGAGGGAGTGGAAAGAAAAAGAGGAAGA
GGACAAGGACGATGCTTTAATGTTTTTCAAATAAAAACAACACCAACAGT
CACACAACTAGAATAATTTGAACCATTAGATAAATCATGTACGATTTATT
ACATTAGATTATAACTCAAAATACAAAGTATATAATGAGCCCATATAGAC
ATAAATATAATATTTTTACTATCTACTTTTAAAGACAATCAACCGCAACT
GTGGTGATTTGAATGAGAATAGCCCCCATAAAAGAATATATTTAAATATT
TGGTTCATAGCTGATGAGACTGTTTGAAAAGGATTAAGAGGTGTGGCCTA
TTTGGCAGATGGGTGTCACTGGTAGTAGGCTATGCCCTTCCTAGTTAGTA
TTTGTTCTTTGCCCTTCTCAATCCCCTTCCCTCAGCCAATGGTCATCGCC
TCCACATGTAAACCCTATATTACTGCCTCCAACTTCATGCCTGTTN

Query= MSMg01no436_p07.b1 MSMg01no436_p07.b1 CHROMAT_FILE:
MSMg01no436_p07.b1 PHD_FILE: MSMg01no436_p07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:10 2005
         (573 letters)



>mm_chr15_66195925_66196897
          Length = 973

 Score =  661 bits (342), Expect = 0.0
 Identities = 395/440 (89%), Gaps = 42/440 (9%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccagatttatctaggagtggggagtgaggcattgtgtaattcctttctttaat 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 398 gaattctccagattgatataggagtggggagtgaggcattgtgtaattcctttctataat 339

                                                                       
Query: 65  ttctttagttaatttcatatcttagtgttgtcagttttcaaggtttaggactgtgattat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ttctttagttaatttcatatcttagtgttgtcagttttcaaggtttaggactgtgattat 279

                                                                       
Query: 125 ttttctgaattatgtttcagcaattttaatgttactataaaaaagctactgatcttttaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ttttctgaattatgtttcagcaattttaatgttactataaaaaagctactgatcttttaa 219

                                                                       
Query: 185 tttttaaatcgttgtatatacacacacactatatacatatacatatacatatacatatac 244
           ||||||||||||||||||||||||||||||                              
Sbjct: 218 tttttaaatcgttgtatatacacacacact------------------------------ 189

                                                                       
Query: 245 atatacatatacatatacatatacatatacatatacatatacatatacatatacatatac 304
                       ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ------------atatacatatacatatacatatacatatacatatacatatacatatac 141

                                                                       
Query: 305 atatacatatacatatacatatacatatacatatacatatacacacatacatatatacta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 atatacatatacatatacatatacatatacatatacatatacacacatacatatatacta 81

                                                                       
Query: 365 gtatactagaataatattatatatacacataagcatagtatatatgtgtgtgtgcatgcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  gtatactagaataatattatatatacacataagcatagtatatatgtgtgtgtgcatgcc 21

                               
Query: 425 tatgtgtatacatgcaacag 444
           ||||||||||||||||||||
Sbjct: 20  tatgtgtatacatgcaacag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 102
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)