BAC Information

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BAC

Clone NameMSMg01-437J02
Chromosome15 (Build37)
Map Location 43,438,093 - 43,438,571
singlet/doubletsinglet
Overlap genenone
Upstream geneAngpt1, Rspo2, LOC675960, Eif3s6, Ttc35
Downstream geneLOC100039288, Tmem74, LOC100039309, Trhr, LOC665041, Nudcd1, Eny2, Pkhd1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437J02.T7 (MSMg01no437_j02.b1)MSMg01-437J02.TJ (MSMg01no437_j02.g1)
ACCAG528369AG528370
length1,343747
length of high quality
(start - end)
---478 (76 - 553)
definitionCHROMAT_FILE: MSMg01no437_j02.b1 PHD_FILE: MSMg01no437_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:00 2005CHROMAT_FILE: MSMg01no437_j02.g1 PHD_FILE: MSMg01no437_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATACTATCAGTCTACAAGTGTCATACAGAATGATTCAGAGCACTGAATAN
ATCGTACTGTCTGATTGCGATGTAGTGAGATATCGGTCGCGGAAGAGCGG
TAGCGCGTGTGCGCGAGTATACGTATATGATATCTCATTTGTATGTATCT
CGCGCGTATGTGGCAGTACGACGTGACTCAATGACTGTGACGGCTGGACG
CATCATACTGATCAGCGACAGCACTATCTATCGCGTGATGATGGACGAGA
CTAAGTTGGTGGAACCGGCAATGTCACACGCCGTTTGTAACGTCAGCGGA
TGNCCGCGCCTGTCACGTGCGTTTTTNGCATNCAATCACTCATCGATTAC
CTCACATCGTATACTTATGGTAGTGGTAGTCCTACACGTACCACCACTGA
TTACTCGAGTGAGAACCGCGACGAAGTACAGTGTGAGATTAGAATAACAT
GGACGAAATGCTATACTGCGACGACGCCACACGCTATGTGGAGGCAGAAT
TTTATCGTTCGGGAGGCGCCGATGTCGAGACGTCTGATGCGAATGTTCGA
TCGCGTAGTGCCTGATCACTTGGGTGAGATAGACTATAGCGCCGTGGCAG
ATTTGATTTATTGAATGGATAGACGCTCAAGGTCGAGCACGAGACGAGCG
GGATATGCAAAACGACGATCTTCCGCATGACAGTGCGTCAGGCTGGAAGT
AGGAGAGGCCGTCCGATGATACTGATCGTCAGGGAGAGGTATGTGAAGAT
CTGATTTGCAGCCAGTGTTCACTTTATATTGCTGCACATAACAGTATCCA
CCTAACTTTTCTCCGTCTTTATATCGCCTGCCATTGCTTCGCCACATACC
GTTTGACATATCGCATGGATAGTATATTGACAGAAGCAGCTGACAGAGCG
CGACAGCCGATAGACATGGCACCAGGAGTAAAGCGCGCGCTCTCAAGGAG
CGGCAGTTTCGTACACCGCTGCACGACGCATTATCCGGGTGTGGTAAGGA
TATTGCACCGCGGACGCGTCGTACGCACTCGGATCTGTCGCGCGATGTAT
ATATGTACGGCCCAGTGTTACGCGACCGCGAACCGTAAATGCGCTATGGC
GCGCGCTATAGAATATAAGAGAATAGAAACGCAAAGAGGACGCGATGTGA
GGCAGCTATCGCGCGGTTGCGGTATTATCTCGACGCTCAGCGCGTTGGCG
CGATCCAGCGCGAGCTCTATTATTCTCCACATGTATGCTCTTGTACTTGT
GACCGATGGANTGATCGAGCGATATCCTACCGCGGACGAGGGCGCTATCT
GACGTGGCGTGCGTGATTATCCTGCGGATGTCGCTGTCTGCTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTAGTGGCCCCTTCAGAAGTCTCCT
GAAATAGTACATCTATTCCAAGGGCATCCTTCTCCATCTTGCCTCTGCTC
ACCACCACAAATACAAGAATGTTTTTCTGAATACTTACTTTGTTTACTTG
GAGTTTCATAAGGCCTCAATCTAAATTGATAGGCGGCAAAAACAGGAATT
GGAGGATTTTTCCCCCTTTGAGAAATTCAACTTTCTCAATAAACACATGC
TTTTGCAACATTCAAAATGACTTTTATTTTTATTTGGTTTCATTTCCTTC
ATTCTTAAAAAAAAATTGACTGACACCATAACATCACTGAAAATTTTTTT
TATTTAATAAAAAAATCACTAGCATCAAATATAATCAAATGAAAACAAGA
CCACTTTTCTAACTTATAAACTAGGCCACAATTCCAGTAGGGTTCCTTAA
TTAAAACCAAAAGGAAATAAACTGACAGAGTTCCACAGGAATGTATTGAA
TGCAACTCTAAAATTTAAAAATATAAAACAATGTTATGACTTAGCTTTTT
GATAAGTATCTGCATTCTTTTAGTTGTTTATTTACCTCTAATTATAGCAT
TGACACAATGCTATGAATAAATATCCTTTATTCTAAGGAAACAACAATAT
CTTTTTTTTTTCACAACTTTTTTTTGCCTCTGCTCTTTTATCCTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_j02.g1 MSMg01no437_j02.g1 CHROMAT_FILE:
MSMg01no437_j02.g1 PHD_FILE: MSMg01no437_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:00 2005
         (478 letters)



>mm_chr15_43437894_43438771
          Length = 878

 Score =  851 bits (440), Expect = 0.0
 Identities = 470/484 (97%), Gaps = 11/484 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagtggccccttcagaagtctcctgaaatagtacatctattccaagggcatccttctcc 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 200 ctagtggccccttcagaagtctcctgaaatagtatatctattccaagggcatccttctcc 259

                                                                       
Query: 61  atcttgcctctgctcaccaccacaaatacaagaatgtttttctgaatacttactttgttt 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 260 atcttgcctctgctcaccaccacacatacaagaatgtttttctgaatacttactttgttt 319

                                                                       
Query: 121 acttggagtttcataaggcctcaatctaaattgataggcggcaaaaacaggaattggagg 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 320 acttggagtttcataaggcctcaatctaaattgataggcagcaaaaacaggaattggagg 379

                                                                       
Query: 181 attttt-ccccctttgagaaattcaactttctcaataaacacatgcttttgcaacattca 239
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 attttttccccctttgagaaattcaactttctcaataaacacatgcttttgcaacattca 439

                                                                       
Query: 240 aaatgacttt---ta--tttttatttggtttcatttccttcattcttaaaaaaaaattga 294
           ||||||||||   ||  |    ||||||||||||||||||||||||||||||||| ||||
Sbjct: 440 aaatgactttgagtaaat----atttggtttcatttccttcattcttaaaaaaaa-ttga 494

                                                                       
Query: 295 ctgacaccataacatcactgaaaattttttttatttaataaaaaaatcactagcatcaaa 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctgacaccataacatcactgaaaattttttttatttaataaaaaaatcactagcatcaaa 554

                                                                       
Query: 355 tataatcaaatgaaaacaagaccacttttctaacttataaactaggccacaattccagta 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tataatcaaatgaaaacaagaccacttttctaacttataaactaggccacaattccagta 614

                                                                       
Query: 415 gggttccttaattaaaaccaaaaggaaataaactgacagagttccacaggaatgtattga 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gggttccttaattaaaaccaaaaggaaataaactgacagagttccacaggaatgtattga 674

               
Query: 475 atgc 478
           ||||
Sbjct: 675 atgc 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)