BAC Information

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BAC

Clone NameMSMg01-437P08
Chromosome15 (Build37)
Map Location 55,829,329 - 55,829,735
singlet/doubletsinglet
Overlap genenone
Upstream geneTaf2, 2600005O03Rik, Depdc6, Col14a1, Mrpl13, Mtbp, Sntb1, LOC665348, LOC100039908
Downstream geneHba-ps3, Has2, EG594843, LOC435442, LOC100040067, LOC100039984
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437P08.T7 (MSMg01no437_p08.b1)MSMg01-437P08.TJ (MSMg01no437_p08.g1)
ACCAG528667AG528668
length804785
length of high quality
(start - end)
411 (53 - 463)379 (80 - 458)
definitionCHROMAT_FILE: MSMg01no437_p08.b1 PHD_FILE: MSMg01no437_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:32 2005CHROMAT_FILE: MSMg01no437_p08.g1 PHD_FILE: MSMg01no437_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGTGATAATTCCGGAATTACTAAATAAGCAAGCATCAC
ATCTAACACAGTGAATGCCATTGCTGGCTCCAAAAGAAGGATGTGGTAAA
TTTCAAGGAAATGTTACCTGAAGTCAACTCACCACTCGAAGGTCAAAACT
CAGGAGGCAAGAGTTGGTAGGGAGACAATCAGATTTATTTAATAAGCACT
ACCAGAGTGCTTATTATACCAGAGAAAATGGTAGATAGAGCTATTCTCCC
CTTCCAAAAAATAATGTCAGGTAACTCAAGTGCACAAAATGCTTTTAGCA
GAGAGAGGGAGTTCGGGGGCAATGGGCACAGGGCTGGTTACTGTTAATGA
AGCCAAAGTGTGGTAACTGTGTAGGGGCATAAGCTCCATTCTGGTTCTGG
AGGCCCTCTAGAGGTTCACAGACAAGAAGTCATTTGAGGGAAATGTTAAT
GAGCATGCATAGTTGACAGGAGAGACCTTACCGAAGCCCTTTTGATGGCG
AGATCAACCCTCTAAATTTTGTTTGGGCCCAAACCATAATGGGACATTGT
TTCCTTTTCTCCACACTTTTTTTCCACCGATAATACATCCACTCTTTTTA
AAAAATACTCTCTTTACCCATACTTTATTCCTTCTTCCATTTTTACTTCC
TTCTACCTTTTCTCCATCATTCTTTCTTACTTTAACTTCTTTTCCCCCCT
CTATTTCCATCTACTTTATACCTTTTCTCTTTTTCTTTCCCCCTTTCCCT
CCCT
NNCCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTGGAAGAATACTGGTAAG
GATTATGGGCCCCAGAGTGGATAGGAACTCCAATGGAAGAATAAAAGAGT
CAACTTACCTGGACCCTTGGGGCCTTCAGAGTCTTAACCATTAAGCAAAG
AACATTGAGTGGACCTAGGCCTCCCCTCTCATATGTAACAGATATATAGC
TTGGTCTTCATGTGGGTCCCAAACAGTAGAAAGCAGGCTATCCCAAAACC
TTTTGCCTATATGTAGGATATTTTTTTACTAGCTGTCATGCTTTGTCTGA
TCTCAGTGGGAGAGGAAGCAACTAGCTCCATAAAGAAAGACTTGAAGTGC
CAGGGGACCCCCAACCGCTCAGAGGAAAAGGAGGGGTACAGTGGGGGAAA
GACTGTGGGTGGGTAGGGTATTCCCTTTTCCTTCCCCCTCCTTTCTCCTT
TTTCCCTTCCTTTTTCTCCTTCTTCTTTCTTTCCTTCTTTTCCCCTTTTG
CCTTTCTCCTTTTTTTTTTTTCCTTTTCTTCTTTCTTCCCTCCTTTTCTC
TCCTTCTTCCCTTCTTTCTCCTCCGGTTCCCACCCTTCTTTCCCTTTTTT
TCTCTTTTCAGGTCCTTCTTCCCCCCTTTCCTTCTTCCTCTATTTTTTCC
TTTTTTTTTGTTTCTTCTTTCCCGCCTCTTTTCTCTTTTTTTTTCCCTTC
TTCTTTTTCTCTCCCTCTCCCTTTTCATCATTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_p08.b1 MSMg01no437_p08.b1 CHROMAT_FILE:
MSMg01no437_p08.b1 PHD_FILE: MSMg01no437_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:32 2005
         (411 letters)



>mm_chr15_55829125_55829935
          Length = 811

 Score =  756 bits (391), Expect = 0.0
 Identities = 403/407 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtgataattccggaattactaaataagcaagcatcacatctaacacagtgaat 64
           |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgataagtagggaattactaaataagcaagcatcacatctaacacagtgaat 264

                                                                       
Query: 65  gccattgctggctccaaaagaaggatgtggtaaatttcaaggaaatgttacctgaagtca 124
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gccattactggctccaaaagaaggatgtggtaaatttcaaggaaatgttacctgaagtca 324

                                                                       
Query: 125 actcaccactcgaaggtcaaaactcaggaggcaagagttggtagggagacaatcagattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actcaccactcgaaggtcaaaactcaggaggcaagagttggtagggagacaatcagattt 384

                                                                       
Query: 185 atttaataagcactaccagagtgcttattataccagagaaaatggtagatagagctattc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttaataagcactaccagagtgcttattataccagagaaaatggtagatagagctattc 444

                                                                       
Query: 245 tccccttccaaaaaataatgtcaggtaactcaagtgcacaaaatgcttttagcagagaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccccttccaaaaaataatgtcaggtaactcaagtgcacaaaatgcttttagcagagaga 504

                                                                       
Query: 305 gggagttcgggggcaatgggcacagggctggttactgttaatgaagccaaagtgtggtaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gggagttcgggggcaatgggcacagggctggttactgttaatgaagccaaagtgtggtaa 564

                                                          
Query: 365 ctgtgtaggggcataagctccattctggttctggaggccctctagag 411
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgtgtaggggcataagctccattctggttctggaggccctctagag 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)