BAC Information

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BAC

Clone NameMSMg01-438A07
Chromosome15 (Build37)
Map Location 87,759,706 - 87,760,001
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042309, AW049604
Downstream geneLOC100042329, LOC100042340, Zdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438A07.T7 (MSMg01no438_a07.b1)MSMg01-438A07.TJ (MSMg01no438_a07.g1)
ACCAG528711AG528712
length816769
length of high quality
(start - end)
179 (66 - 244)564 (66 - 629)
definitionCHROMAT_FILE: MSMg01no438_a07.b1 PHD_FILE: MSMg01no438_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:37 2005CHROMAT_FILE: MSMg01no438_a07.g1 PHD_FILE: MSMg01no438_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCCGCTAAACGACTACTATATTCAGAGAAGGCGCGGAATTCCTCACAA
GTTACAGCTACGGAGGGTGTAGCAGGACTCCTGTTTCTTCCTTCCTTCCA
ATTGGCTGGGTTGCTCTTGTTAACTTAATCTGCGTGGCTCCTGGGCTTCC
TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCCCTCTCCCTCTCTCTTTCTCTTTCTCTTC
CTCTCTCTCTCTCCCCCTCTCTCTTTCTCTCCCTCTCTCTCCCTCCCCCC
TCTCTCTCTTTTTTTTTTTCGCGTGCGCTCTCTCTTCCTCTCTCTCTCTC
TTTCTCTCTCCCCTCAACTCATAGATACTGCATATTATTGTTTTTTTATA
CTTTGGCCACCGGTTTTATTCTTGAGCTCTCGATCTTCCTTTGGGTAAAC
AAATTAGAGTAGAGGCTTCGTCTTATTGTTGCGTGGTCATCCTTTTATGT
GTGTCAAATTATCTCGATGCTCCTGCATATTCTAGATTTTACATTACATT
TTTATACTATGTCTTCATATATTTCATGTAATGAGGTGGTACTCACTTTT
TATTTATATGGTTTTTTCGCGTTATACAGTATAAGAGGTATGTAAACTTC
TTTTAAGATAGTAATTCATTTCTCTCCTCTAACTGTCTTTTTATTTTTTG
TGGGGTCTAATTCTATAGCAAATTACTGGAAGATCAAGCTATATTTTTTT
AGTTATTGTTAGTTTTCTTTTATGTATCTCTTTCTTATTTCGTTTCGTGC
ACAAATATTAAGTGAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCACCTCAAAGGCCTAAAAAATAGAGTTGACAGAT
TTTAAAGAGTGAGCAGAAGAGGACAATTTACCCACAAGGGAGCAACAAGT
GAAAAGGCAGATATCTGAGACTCCTAGTGGCAAGACACTCTGCTTCTTGG
GCTTTTGTCACCTTGACACAGGTGAGAGCCACCTGGGAAGATAGAATCTC
CTTTAAGAGAATGGCTTAATAAAACCATAAGACTAACCAGTAGGCAATCC
CACATGACCCTGGTCAATGTGGGAAGGCCCCATTTATTGTAGTCAGTACT
ATCTCTGGGCACCTTCATATACATATAATAGACTGGAGAGCAAGCTAGTT
AACAGCATTCTTTGATGATCTCTGCTTCAGTTCCTGCCTCCAGGGTCCTG
CCCTGAGCTCCTGCCTTGACTTTCCTCCATGATGAGCTATTACTTGTAAG
CCAAATCAACTCTTTCTTTGCCAAGTTGTTTTTTCTCATGGAGTTCTAAC
AAAACAACAGAAACAAAGCTAGAAGAGAAATTGGTAGCAGAAGTTGGGTA
TCACTACCTCTGAGTCACTCCTGCTTGCCCCAAGTGCCCTGGAAGGGTAA
GGTTTGACACTGGGCAATGCTAACCACACAATGTTCTAAGAATGCCTGAA
CTCAGACATTGGGCGAATGGGGGAGGACTTTAGACATTACTACATTTTAA
ACTTCCTCCTTATTGATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_a07.g1 MSMg01no438_a07.g1 CHROMAT_FILE:
MSMg01no438_a07.g1 PHD_FILE: MSMg01no438_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:37 2005
         (564 letters)



>mm_chr15_87759665_87760628
          Length = 964

 Score =  518 bits (268), Expect = e-151
 Identities = 289/296 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacctcaaaggcctaaaaaatagagttgacagattttaaagagtgagcagaagaggaca 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 337 tcacctcaaaggcctaaaaaatagagttgacagattttgaagagtgagcagaagaggaca 278

                                                                       
Query: 61  atttacccacaagggagcaacaagtgaaaaggcagatatctgagactcctagtggcaaga 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 atttacccacaagggagccacaagtgaaaaggcagatatctgagactcctagtggcaaga 218

                                                                       
Query: 121 cactctgcttcttgggcttttgtcaccttgacacaggtgagagccacctgggaagataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 cactctgcttcttgggcttttgtcaccttgacacaggtgagagccacctgggaagataga 158

                                                                       
Query: 181 atctcctttaagagaatggcttaataaaaccataagactaaccagtaggcaatcccacat 240
           ||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 157 atctcctttgagagaatggcttaataaaaccataagactaacaagtaggcaattccacat 98

                                                                   
Query: 241 gaccctggtcaatgtgggaaggccccatttattgtagtcagtactatctctgggca 296
           |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  gaccttggtcgatgtgggaaggccccatttattgtagtcagtactatctctgggca 42


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)