BAC Information

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BAC

Clone NameMSMg01-438L03
Chromosome15 (Build37)
Map Location 77,707,059 - 77,707,275
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6, Rbm9, LOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik, LOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9
Downstream geneTxn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438L03.T7 (MSMg01no438_l03.b1)MSMg01-438L03.TJ (MSMg01no438_l03.g1)
ACCAG529229AG529230
length791784
length of high quality
(start - end)
187 (71 - 257)214 (73 - 286)
definitionCHROMAT_FILE: MSMg01no438_l03.b1 PHD_FILE: MSMg01no438_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:34 2005CHROMAT_FILE: MSMg01no438_l03.g1 PHD_FILE: MSMg01no438_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGGCGGCGCTATACGACTCACTATATTTCGACGAATCCGCGGAATT
CTTCGCACATTTCCCTGACTGCATTTTAAGCATCAGAAAATGTCAGCCTT
CGGAGCCAAAAGGATTTGTCTCCACTTAATACACACATACACACACACAC
ACACACACACACACACACACACACACACACACACACACCACTGTTGCATG
AAAATGGAATCCACGCCATGTCAGCAGTATACTGGCTGGCCGGTCAGGCA
CCGGTGGGCAGGCTAGCCTGTTCTCATCTTTTCAGACTCTCTGACCTGCA
GATACAAAATCTCCACCCAACTTGTTAAGTTCTCATGGTGGGTTGCTGCC
ACACCAGTCCCACGCTTCCAAATTCCCACGGCCTTTTGGGGTGCACCCTC
AACCCATGCTTTTCCCCCATAGCTTTCTCTCTGGAATCCATTTGGTTCGC
CACATGAAGGAAACGAAAACACCACACAAACTTACCTTACAATTAACATG
TAACACTATCGTTGGTCTCATCAACTCACATCCTAATTTGTAATCATTCC
AAATTAAACCCTCCTGTACAGGTATCCATTTCATTCTTCCTCTTATATCG
AGACTTTGTTATTTAACTTTTTGCCTCTCTTAACTCCTTTTATAAATACT
AATACTTCTCTTCTTGTTTTCTCTTTTTTACTTTCCCATTTTACAAATTC
TCCTTCTTACCTCTTTTTCTTTTAATTTTTTCTTCTCGCATCTCCATATT
TTATTCATCTCTTAGACATCTTTCTTCAACATCATTTTATG
CATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCACTCATAGAGGCAGCAGACTTCAAC
CATACCCTGAGATCAGGTACTCCCTGCCTGGTTCTCCTCCTTCCACTAGG
CCCTGATGAGAGCTAGGCAGCAGGTCCTGGAGAACACTACAGAGGGGGTC
CAGCTGTGGACACATGGTGAGCCTCACCCAGGGTCACTGTCATTGTGGAT
AACTTCTGAATTCCTTCAAAATGTCCTTTATGAGAGTCAGGACTCAGTCT
AGACCACTGACTATAACACATCGTTGTTGAGTTATGATGCCTGATACTGC
TGGAGCCAGAGCCCTCTCCTTACTCCATCTGTGTCTCGTAGTCTGTTATG
GTCCTGATTTGTGTTTTCCCCCCCCCCCCCTGTCTGTTGTTTGTATGCCG
TTCTTTTTTTTGAGCTCTCTTTTTATAGCTCTTCTCTTTCAGGTTTTCCC
CTCCTTTTCTCCCTGCTCTTTTTTCTTTTTTTCTTGCTCCCCTCCCTCTT
TCCCGTTCTTTGTTTTTCTTCTCGCACTTTTCTCTCCTTTCTTTTTTTCT
TTTTGCTCTTTCTTCCTGCCTCCCCCTCATTTATTCTTTTTTTTACCGAC
TTTTTTTCACCCCTCTTTTCTTTCTATATCTTGTCTCTCCCTATTCCCTT
CCTTACTTCTTCCTCCGCTTTTGCATACTCATTTCTCGCTCTCTGTTGTT
TCTTACTCTTTCTTATCTTCTTTCTTCTCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_l03.g1 MSMg01no438_l03.g1 CHROMAT_FILE:
MSMg01no438_l03.g1 PHD_FILE: MSMg01no438_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:34 2005
         (214 letters)



>mm_chr15_77706859_77707475
          Length = 617

 Score =  344 bits (178), Expect = 2e-99
 Identities = 207/218 (94%), Gaps = 5/218 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcactcatagaggcagcagacttcaaccataccctgagatcaggtactccctgcctggt 60
           ||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 201 ttcactcctagaggcagcagacttcaaccataccctgggatcagggactccctgcctggt 260

                                                                       
Query: 61  tctcctccttccactaggccctgatgagagctaggcagcaggtcctggagaacactacag 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 tctcctccttccactaggccctgatgagagccaggcagcaggtcctggagaacactacag 320

                                                                       
Query: 121 agggggtccagctgtggacacatgg---tgag-cctcacccagggtcactgtcattgtgg 176
           ||||| |||||||||||||||||||   | || ||||||||||||||||||||| |||||
Sbjct: 321 aggggatccagctgtggacacatggacat-agacctcacccagggtcactgtcactgtgg 379

                                                 
Query: 177 ataacttctgaattccttcaaaatgtcctttatgagag 214
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ataacttctgaattccttcaaaatgtcctttatgagag 417


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 617
Length adjustment: 9
Effective length of query: 205
Effective length of database: 608
Effective search space:   124640
Effective search space used:   124640
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)