BAC Information

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BAC

Clone NameMSMg01-439L09
Chromosome15 (Build37)
Map Location 56,982,818 - 56,983,241
singlet/doubletsinglet
Overlap genenone
Upstream geneHba-ps3, Has2, EG594843, LOC435442, LOC100040067, LOC100039984
Downstream geneBC026439, Zhx2, Derl1, Wdr67, BC030396, 9130401M01Rik, Zhx1, Atad2, LOC665244, 2410187C16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439L09.T7 (MSMg01no439_l09.b1)MSMg01-439L09.TJ (MSMg01no439_l09.g1)
ACCAG530000AG530001
length751719
length of high quality
(start - end)
432 (43 - 474)282 (70 - 351)
definitionCHROMAT_FILE: MSMg01no439_l09.b1 PHD_FILE: MSMg01no439_l09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:54 2005CHROMAT_FILE: MSMg01no439_l09.g1 PHD_FILE: MSMg01no439_l09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATAAXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAA
TTCTACTATTTGCCTCCCTTACGCACACACCAACTAAAAAGTCTTAACAT
CTTTCTACCCCCCAATAATCCTGCCAGCTATGGATAAAGTCTGCCAATCA
CAAGCTTTAAGGGACCCAGATATAGCTGTCACTTGTGAGACTATGCTGGG
GCCTAGCAAACACAGAAGTGGAGGCTAACAGTCAGCCATTGGATGAATCG
CAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGA
ACTGCAACCCTATATGATGAAACAACAATATGAACTAACCAGTACCCCTG
GAGCTCATGTCTCTAGCTGCATATGTATCACAAGATGGCCTAGTCGGCCA
TCAGTGGAAAGAGAGGCTCATTGGACACGCAAACTTTATATGCCCCAGTA
CAGGGGAATGCCAGGGCCAAGAAATGGGAGTGGGTGGGTAGGGGAGTGTC
CTCCCTTTATCTTTTTCCTCTCTTTCCTTTTTTTTCTTCCCCCTCCCTTT
TTCCCCATCCTTCCTTCCTTTCCCATTCTTTCCCTTTTTTCCCTTTTCTT
TTATCCCCCCTTTTCCCCCCCTTTTTTCCCTCTTCTCCCCCCATCTTTTC
CCCTCCATTTACTATATACCCCTACTCCCCTCTCTTAACTCCCTTTTCTA
TCACTTCCCCTCTCCTTTAGCCCCCTCTTTAATCCATACTTTCCGCTCTT
C
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGACACAAAAAGGATCACAGGAGGGATAGGC
TGCAGTCAGAGACAGCAAAGGCAGATAGCACTAGAGATAACCAGATGCTG
AGGGGCAAGCATAAGCAACAGAAATTAAGGATACTTGGCATCATCAGATC
CCAGTTCTCCCACCACAGCAAGTCCTGGATACACAATCACACTGATTAAG
CAAGATTTGGATATAAAATCACCTCTTATGATGAAGATAGAAAACTTTAA
GAAGGACATATATTACTCCCTTAAAGAAATACAGGAGACCATAGAAGCTA
GAATCCCTTAAAGAGGAAACACAAAAACCCCTTAAAGAATTATAGGAAAA
CACAACCAAATAGGTGAAGAAACTAAACAAAACCATCCAGGATCTAAAAA
TGGAAATAGAAACAATGAAGAAAACACAAAGGGAGACAACTCTAGAATAT
AATACCTTGGAAGGAGATCAGGAGTCATAGATGCAAGTATCACCAACAGA
ACACAAGAAATAGAAGAGAGAATCTCAGGGGCAGTAAGATACCATAGAAA
ACTCGGACACTACAACCATAGAAAATGCAAAACGTTTACTTATTCTATCT
CCAATTATCCCGGACATCCTGCACCTTTTGAGGACCCCTATTTTATCACA
CGTATATAACACACCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_l09.b1 MSMg01no439_l09.b1 CHROMAT_FILE:
MSMg01no439_l09.b1 PHD_FILE: MSMg01no439_l09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:54 2005
         (432 letters)



>mm_chr15_56982613_56983443
          Length = 831

 Score =  646 bits (334), Expect = 0.0
 Identities = 403/426 (94%), Gaps = 2/426 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctactatttgcctcccttacgcacacaccaactaaaaagtcttaacatctttcta 65
           |||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 206 gaattctactaactgcctcccttacgcacacaccaactaaaaactcttaacatctttcta 265

                                                                       
Query: 66  ccccccaataatcctgccagctatggataaagtctgccaatcacaagctttaagggaccc 125
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ccccc-aataatcctgccagctatggataaagtctgccaatcacaagctttaagggaccc 324

                                                                       
Query: 126 agatatagctgtcacttgtgagactatgctggggcctagcaaacacagaagtggaggcta 185
            |||||||||||| ||||||||||||||| || |||||||||||||||||||||||||| 
Sbjct: 325 tgatatagctgtcgcttgtgagactatgccggtgcctagcaaacacagaagtggaggctc 384

                                                                       
Query: 186 acagtcagccattggatgaatcgcagggcccccaatggaggagctagagaaagtacccaa 245
           |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 385 acagtcagccattggatggatcacagggcccccaatggaggagctaaagaaagtacccaa 444

                                                                       
Query: 246 ggagctaaagggaactgcaaccctatatgatgaaacaacaatatgaactaaccagtaccc 305
           ||||||||||||||||||||||||||| | || ||||||| |||||||||||||||||||
Sbjct: 445 ggagctaaagggaactgcaaccctatagg-tggaacaacattatgaactaaccagtaccc 503

                                                                       
Query: 306 ctggagctcatgtctctagctgcatatgtatcacaagatggcctagtcggccatcagtgg 365
           ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 504 ctggagctcgtgtctctagctgcatatgtatcacaagatggcctagccggccatcagtgg 563

                                                                       
Query: 366 aaagagaggctcattggacacgcaaactttatatgccccagtacaggggaatgccagggc 425
           ||||||||||||||||| |  |||||||||||||||| ||||||||||| ||||||||||
Sbjct: 564 aaagagaggctcattggtcttgcaaactttatatgcctcagtacagggggatgccagggc 623

                 
Query: 426 caagaa 431
           ||||||
Sbjct: 624 caagaa 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 831
Length adjustment: 9
Effective length of query: 423
Effective length of database: 822
Effective search space:   347706
Effective search space used:   347706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)