Query= MSMg01no439_p07.b1 MSMg01no439_p07.b1 CHROMAT_FILE:
MSMg01no439_p07.b1 PHD_FILE: MSMg01no439_p07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:13 2005
(464 letters)
>mm_chr15_5754525_5755387
Length = 863
Score = 806 bits (417), Expect = 0.0
Identities = 450/461 (97%), Gaps = 3/461 (0%)
Strand = Plus / Plus
Query: 5 gaattcatgaagttcc-tagacaaatggatggatctggataatatcatcctaagagaaat 63
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgaag-tccttagacaaatggatggatctggataatatcatcctaagagaaat 263
Query: 64 aacccaatcacaaaagaacacacaatatatgcgctcactgataagtggatattaacccag 123
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 264 aacccaatcacaaaagaacacacaatatatgtgctcacagataagtggatattaacccag 323
Query: 124 aagctcagaaaactcataagttttaaaatgagaatattcttcctgtgtatgctctgtagc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagctcagaaaactcataagttttaaaatgagaatattcttcctgtgtatgctctgtagc 383
Query: 184 tggcattgctactggggctgtgtttagaagattaataataagggtgatgacaaccacatt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 384 tggcattgctactggggctgtgtttagaagattaataataagggtgatgacaaccacgtt 443
Query: 244 tccagtgactcacagaacagcagcacctaactcaggcctatcagtccttgtctgtggtcc 303
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 tccagtgactcacagaacagcagcacctaacacaggcctatcagtccttgtctgtggtcc 503
Query: 304 ttgtaaacttgcgaaaatactgttaagcccttgcctgctgatcaatccttgcccttctcc 363
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 504 ttgtaaacttgcgaaaatactgttaagcccttgcctgttgatcaatccttgcccttctcc 563
Query: 364 atatgaaaaattgagaatcccaggtccaggtcaaacaacacaggtcacatcattataact 423
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atatgaaaact-gagaatcccaggtccaggtcaaacaacacaggtcacatcattataacc 622
Query: 424 agctacaacgatgtcaggccgcatttgcaaaagctccagat 464
|||||||||||||||||| ||||||||||||||||||||||
Sbjct: 623 agctacaacgatgtcagggcgcatttgcaaaagctccagat 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 863
Length adjustment: 10
Effective length of query: 454
Effective length of database: 853
Effective search space: 387262
Effective search space used: 387262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_p07.g1 MSMg01no439_p07.g1 CHROMAT_FILE:
MSMg01no439_p07.g1 PHD_FILE: MSMg01no439_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:13 2005
(403 letters)
>mm_chr15_5915081_5915884
Length = 804
Score = 694 bits (359), Expect = 0.0
Identities = 392/403 (97%), Gaps = 3/403 (0%)
Strand = Plus / Minus
Query: 1 tctagacttcacagagtagttgcagacaacataagtgaaatgaaaatcttatttgaagaa 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 493 tctagacttcacagagtagttgcagactacataagtgaaatgaaaatcttatttgaagaa 434
Query: 61 gtcagattgaacattaaatttgaatgaaatgcaaagaacatacattttaatgataaattt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 433 gtcagattgaacattaaatttgaatgaaatgcaaagaacatacattttaatgctaaattt 374
Query: 121 agaggaaaaggaaggaattactaagggttttatgattaaaaaaa-cttttattttgtatt 179
|||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||
Sbjct: 373 agaggaaaaggaaggaattactaaggattttatgataaaaaaaaccttttattttgtatt 314
Query: 180 attcttcagattctctaacgaaa-ggatgaatgtttatctgattctcaagtcaaaaatac 238
||||||||||||||||||| ||| |||||||| ||| ||||||||||| |||||||||||
Sbjct: 313 attcttcagattctctaac-aaacggatgaatatttgtctgattctcatgtcaaaaatac 255
Query: 239 aaaatatggaatagtttgaaagcttgtagaaaccataatgagataatgagatgtcacttt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aaaatatggaatagtttgaaagcttgtagaaaccataatgagataatgagatgtcacttt 195
Query: 299 agacaagttctggcagattattatgtaagccattttccattgttcctctgacccagtaat 358
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 194 agacaagttctggcagattattatgtaagccattttccattgttcctatgacccagtaat 135
Query: 359 tctactctcagacatgtactctgaagaaatcaaaccagactgc 401
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tctactctcagacatgtactctgaagaaatcaaaccagactgc 92
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 804
Length adjustment: 9
Effective length of query: 394
Effective length of database: 795
Effective search space: 313230
Effective search space used: 313230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
