BAC Information

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BAC

Clone NameMSMg01-440E16
Chromosome15 (Build37)
Map Location 27,371,682 - 27,372,199
singlet/doubletsinglet
Overlap genenone
Upstream geneFbxl7, LOC622531, LOC625311
Downstream geneAnk, BC087945, LOC100040622, BC052328, Trio, LOC667126, Dnahc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440E16.T7 (MSMg01no440_e16.b1)MSMg01-440E16.TJ (MSMg01no440_e16.g1)
ACCAG530443AG530444
length804738
length of high quality
(start - end)
65 (79 - 143)518 (84 - 601)
definitionCHROMAT_FILE: MSMg01no440_e16.b1 PHD_FILE: MSMg01no440_e16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:41 2005CHROMAT_FILE: MSMg01no440_e16.g1 PHD_FILE: MSMg01no440_e16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAAATTCCCCNNXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGG
ATCCGCGGAATTCCTCCCCTTTCTTTGGGCCCTCCCGTTCCTGGCTTCAT
GCCTTCACTCCCATTACTGGCTCTACTTCTTACGTTATGANAAACATGGC
TTCCTGNATCCTTNGTGCTATCNTAACTCCCCTGAAANCTTTCCCCATTN
NTGCTGTGTGTACTTTACCTGTTGCGNNNNNNNNNTNNNNCTCTTNNCCA
CTGACCTTNNTTGNNGGTCTGGGGGTACTTTGAGGCGGTTGGTTTGTTGT
TGGGTGTAGGGGGGGGGGGGCGGGTCGGTGGGGGAGGCAGAGCTCTTTGC
GGTGGAAAGAAAACCACACGTTTAAAAAGCTCTCTCCCTTTTTTCCCCCC
AAAAACCCTTCTTNNCAACCCCCCCGGGGGAAAAAAGGGNNNNAAAAAAA
CCCCCCCAAAATTTCTTTTCCCCCCGGTTTGTTTGGAAAAAACCCCACCC
TCTGGGGGCCNNNNNNNAACNNCTCCTCTTCCCCCCCCCCCCCCAACAAA
AAAAAAAAACACNCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNCTNNN
NCNCNCNNNNNNNNCTNTNNCTTCCCNCCNCNCCNNCCCNCCCCTTCCCN
CTTNCCCCNCCTCCNNNTTTTTTCTTTNTTNNNNCTTTCNCCNNNTNNNT
TTTCNCNTCCCNNNCTCCNTTTTTCCCCCCCCCNCNNNNNNNNNNCCCCN
NCCCNNCNNCCCTNCNCNNNTTCCCCCCCTTCTCTCTTCTTTTTTGTTTT
GGTG
NNNNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTGTTCTCAGATCCA
GGAAGAGCAGATTCACATAGGTTGTCCTTCTCACCCTGCCTATGTGATTA
CCAGGTGATCAGAATGATGGGCACAATAAATACAGAAATCACAACGTTTC
CTTTTCCCACAAGGCATACCATGATCAGACCCCCATACCTATGGAAGGGG
AATCTCCTTGTCCTGTACCAGGATCAACCAGATCCCCAGAACTGCAGAGA
GTTTCCTCGTATAAAGAAGCAGGCCATTAGATATAACACTAGTTATGCAG
GAACCATGATGGGAGGGAGGGCCCTGTGTGGGGATGACCTCATCTTTATT
GTCCCCCGGGTGACATCCACCATTTGTCATCATGATAGTAATGGTGGCAC
ACATTGCTAAGTACGGAAAATTTAAAAGGCCTCAGGGCAACATCTGAAAG
ATTGTGTGATTAAAGTCACTAGAACTATCTCGCTAGGTAATGGATTTATT
GTGTCTGCTGCATAATAGCTCCCCACCCCTCAAACCAGATGATGTTGGAA
TTAAGAGTGGTCAGGTTTCCAATCTGGTAAACTTTAACATCTTCCAATTC
CTCAGTCACAAGAGGCAAGGATTTCCAGGGATATTTCTTTACGCTGGCAG
ACGGGACCCAAGGAGAAAGGCCAAGTTTATACTAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_e16.g1 MSMg01no440_e16.g1 CHROMAT_FILE:
MSMg01no440_e16.g1 PHD_FILE: MSMg01no440_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:41 2005
         (518 letters)



>mm_chr15_27371482_27372399
          Length = 918

 Score =  994 bits (514), Expect = 0.0
 Identities = 517/518 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctgttctcagatccaggaagagcagattcacataggttgtccttctcaccctgcctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tcctgttctcagatccaggaagagcagattcacataggttgtccttctcaccctgcctat 659

                                                                       
Query: 61  gtgattaccaggtgatcagaatgatgggcacaataaatacagaaatcacaacgtttcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gtgattaccaggtgatcagaatgatgggcacaataaatacagaaatcacaacgtttcctt 599

                                                                       
Query: 121 ttcccacaaggcataccatgatcagacccccatacctatggaaggggaatctccttgtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttcccacaaggcataccatgatcagacccccatacctatggaaggggaatctccttgtcc 539

                                                                       
Query: 181 tgtaccaggatcaaccagatccccagaactgcagagagtttcctcgtataaagaagcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tgtaccaggatcaaccagatccccagaactgcagagagtttcctcgtataaagaagcagg 479

                                                                       
Query: 241 ccattagatataacactagttatgcaggaaccatgatgggagggagggccctgtgtgggg 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ccattagagataacactagttatgcaggaaccatgatgggagggagggccctgtgtgggg 419

                                                                       
Query: 301 atgacctcatctttattgtcccccgggtgacatccaccatttgtcatcatgatagtaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 atgacctcatctttattgtcccccgggtgacatccaccatttgtcatcatgatagtaatg 359

                                                                       
Query: 361 gtggcacacattgctaagtacggaaaatttaaaaggcctcagggcaacatctgaaagatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gtggcacacattgctaagtacggaaaatttaaaaggcctcagggcaacatctgaaagatt 299

                                                                       
Query: 421 gtgtgattaaagtcactagaactatctcgctaggtaatggatttattgtgtctgctgcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gtgtgattaaagtcactagaactatctcgctaggtaatggatttattgtgtctgctgcat 239

                                                 
Query: 481 aatagctccccacccctcaaaccagatgatgttggaat 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 aatagctccccacccctcaaaccagatgatgttggaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)