BAC Information

Click to search

BAC

Clone NameMSMg01-440E21
Chromosome15 (Build37)
Map Location 74,538,891 - 74,539,308
singlet/doubletsinglet
Overlap geneJrk
Upstream genepPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966, EG666113, LOC100041307, LOC100040984, Bai1, 1700016M24Rik, Arc
Downstream gene4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440E21.T7 (MSMg01no440_e21.b1)MSMg01-440E21.TJ (MSMg01no440_e21.g1)
ACCAG530453AG530454
length770770
length of high quality
(start - end)		421 (54 - 474)377 (83 - 459)
definitionCHROMAT_FILE: MSMg01no440_e21.b1 PHD_FILE: MSMg01no440_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:42 2005CHROMAT_FILE: MSMg01no440_e21.g1 PHD_FILE: MSMg01no440_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTTTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTCAGCAACTTAGGCTACCGGGAGGCTCAACTTATGA
TGGCTTAGTGCCTGCCCTGCAGATGTGTTGAGAGTGGTTTAGTGACTGAA
GACACCCACTTCAGAAATGAAATTTTTGCCAAGCTCCATGTAGTGGTCCA
AGCCTACCATCTCAGCACTTGAGAGACTGAGGCAGAATGGCTTTGAGTAC
AGTGCCAGCCTGGGCTACCCAGTAAGTGCTAATGAAGGGGGAAAGGGGAA
AGAGGAAATTTGAATTTGGTACCACTCTTAGAACCTCTTAAACGTGACTG
CAGAGATCCAGGAGGCTTCTACCTTGGGAAGAACTGTTCCAAGGGAACAC
TGATAACCAAGGACCACTTGAACAGAAGCTTAAAGGACCTTTTCTGGAGC
GGGAGTATAAAGTGGGAGAAGCTCCTAAGAGGAGAGGCAAATTTCTTCCC
GCAGGTCCTGAGACGTCTTGGGAATGTATGGAAGAAACAGCCTGCAACCT
AACTGCAGCCCCGACGAAACACGGGGAAAAAAAACTCATAACCTAAAACT
CCTTCCCCGGGCAGAAATAAATGAAAGGGCCCGGGAAAACCAATAAATAC
CAAATTTGCCGGCTCGGGACAGGTGAAAACCCGCTACCCTAGAGAACTTG
AAAAAAGGTTTCATCTCCAATTGATTTCCTTTCCCTAGCTCATACATATT
ATTTCCCCCTTCTTGTTTAG

NNNNNNCCCGATGCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCCATGGTCAGCTC
AAAGACTTTCTAGGATGCTATATCCTGTCCTATGCTAAGACTACTACTTC
TAAGACATCCTTTGCTTCCAAATTTTTATCTATATAATATGTTGCTCTGA
CAAAGCTATGGAAATATTCCTATGCTTATCATTAACAAAATTCGCAGTAT
GCAGCTGTTGAACTAAGGCTATGGTAGATACCTTTTCAAAGTTTGCATTC
CCAGATTTTTAAACCAAGGATCGTTTCTTAACTCTAATAGGCAGCAAAAC
ATAAGCAGGTCTCTAACAAAAACATAACAGCAGATTCCTTATCTAAATTA
GGATCTACACAATTAGCTAATTGACAAGAATTACAATGAATATGAAAAGA
CTTGCCAAGATTGGTGATCTTTACTCTTAAAATTGTTTAACAATAAGCAT
ATAGGTAAGGTACACAAACTTTTATAGCTATAAAGAGCTTGGCTGAATGG
GCAAAAACAGTGTCTCTTGAAAAAGCATCTTGAAAATTCTTTGTACCATC
CTTTTTGCCCTGGAAAAGCTTTTTTATTGGGTTTTATTTAAAAGGGCCCC
AATTGGCCCCCCTTGTTCCCCCCGGTGGGAAAAAAAAATTTTTTTTTTTT
TTAAGGGGGGGCCCCGAATCCCTTTTTTTTTGCTCTTAAAATCTTTGTTT
CACCGGTCCGGTTTCCATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_e21.b1 MSMg01no440_e21.b1 CHROMAT_FILE:
MSMg01no440_e21.b1 PHD_FILE: MSMg01no440_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:42 2005
         (421 letters)



>mm_chr15_74538688_74539508
          Length = 821

 Score =  801 bits (414), Expect = 0.0
 Identities = 417/418 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctcagcaacttaggctaccgggaggctcaacttatgatggcttagtgcctgcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctcagcaacttaggctaccgggaggctcaacttatgatggcttagtgcctgcc 263

                                                                       
Query: 64  ctgcagatgtgttgagagtggtttagtgactgaagacacccacttcagaaatgaaatttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgcagatgtgttgagagtggtttagtgactgaagacacccacttcagaaatgaaatttt 323

                                                                       
Query: 124 tgccaagctccatgtagtggtccaagcctaccatctcagcacttgagagactgaggcaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgccaagctccatgtagtggtccaagcctaccatctcagcacttgagagactgaggcaga 383

                                                                       
Query: 184 atggctttgagtacagtgccagcctgggctacccagtaagtgctaatgaagggggaaagg 243
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 384 atggctttgagtacagtgccagcctgggctacccagtaagtgctaatgtagggggaaagg 443

                                                                       
Query: 244 ggaaagaggaaatttgaatttggtaccactcttagaacctcttaaacgtgactgcagaga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggaaagaggaaatttgaatttggtaccactcttagaacctcttaaacgtgactgcagaga 503

                                                                       
Query: 304 tccaggaggcttctaccttgggaagaactgttccaagggaacactgataaccaaggacca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tccaggaggcttctaccttgggaagaactgttccaagggaacactgataaccaaggacca 563

                                                                     
Query: 364 cttgaacagaagcttaaaggaccttttctggagcgggagtataaagtgggagaagctc 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cttgaacagaagcttaaaggaccttttctggagcgggagtataaagtgggagaagctc 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |