BAC Information

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BAC

Clone NameMSMg01-440I17
Chromosome15 (Build37)
Map Location 47,969,512 - 47,969,980
singlet/doubletsinglet
Overlap geneCsmd3
Upstream geneLOC665130, LOC100039485, LOC100039493
Downstream geneEG665146, LOC100039600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440I17.T7 (MSMg01no440_i17.b1)MSMg01-440I17.TJ (MSMg01no440_i17.g1)
ACCAG530636AG530637
length7481,409
length of high quality
(start - end)		469 (80 - 548)---
definitionCHROMAT_FILE: MSMg01no440_i17.b1 PHD_FILE: MSMg01no440_i17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:02 2005CHROMAT_FILE: MSMg01no440_i17.g1 PHD_FILE: MSMg01no440_i17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTTNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAG
AGGATCCGCGGAATTCACATACAATTGCTATTTTTGTAGGGTCAGGGTAT
AATGCTATGCCCATATGAATACAATTTTAAAAGAAAAATATATTTATAAG
CCTTGAATTATGATATATACAATATATCTTATGAGATGAAAGAATTAAAG
AGAAAATGAGTCTATGTCCTACCTCATATTATTTGAATTGTCAGGTGCAG
AAATTTAATAATTGTATCTTAAATAAGAACTTCATAGCCTCCTTTGAATT
GAAGTCAGAAATTTTCTTCATAAAGAGCTAAATTTACTAGTTTAATTTAT
ATCCATAACACTTTATTTTTCTTTGCTAAAGACAGTTTCTTCTTTGTCTC
AGTAGCCATTTATTGACATAAAATAATAAAAGGTGACCCTCTCTAGCACC
AAGTGAAATGACCCTTGCTATTCACAACCACAGAAAAGGCCTTTTCTTTC
AAACAGAATCTATATCAATTGCCCAGGTCCTGATATGATAACTGTATCAA
AGGGAATTTAGCCAAATTCTATAGAGCTATGAAGAACAGGGAAAGATGAG
GGTCAGCAGAACTCAGAGTGGTTTCAGTTAACAGAACAAAAGGGAAGGGT
CTCTGCTAATCACGTAAAAGTAAATATGAGTAAAAAAAGAAAAAATTATC
CCCTGGGGATAAAAATTAATCCCAATATTTCCGCAAAAAAGGGGTTCN

TTCTCCCCCGCGCGGTGCGTCGGTGCCTGTAAACAAGTCTGTCATCCTTT
GTCGCTCTTCTCACTACACTTAGCAAACGCTCACCTACATGATTCTTCTC
AACACCTCTTACTTCTCAGCTGTCCACAACTATTACCTACGAATCCGCAC
AGCCAACGCGCACATACTGCGTGAGGCTGTTCTGTGTTTCTTATGTTGGG
TGTTATGTTGGTGGCTCGCTGGCTGCTGTGTCTCGCTGCGAGAGAGAGAT
ACGATGTGAGAGTGGAACAGAGGCAAGAGCACCGATGATCACTCTCGCAA
ACTTTCCGGACCCTTATACTTCTCCCAGTGATTTGCGATGCATCATCGGA
TCTGCGTGGAACGCGCGCCTGGCAGCCGTGTCTCAGCCCAGCCAGTCCGA
CTAGTGGCAGGAGGGAGTTGATACGAGGAGTGGATGAAGATACTGAGGAC
GGCATGTATAAGCGAGGTGACGTATGTGAGATGAGTCCATACACTACGTA
GTGTTGATGGTCTGTGTCTGTAGAGGCTGTTCTAGCGAACTATCTCTCTC
GATGAGGTGATAATGATGCAGGTGGATACCGAGAGAAGCGCTGGACATTA
CGTGTACAACCGCTATGTTAGATGTTATCGCTATGATCTGATCTACTGCT
ATGCTATGTACCGATATCGTAGAGTAGTCATTGGTGAATGAATACGCATT
ATACTACCACTCATCACACGTACCTTGCTCATATCGATGTCACTCACGCC
TGCCTCATTGTGTGACCGATATCATTCACACATTGCGATACGTGTATACA
GAGTAGCGAGTACACATCATTCAACTACAGCATGATCAGGATGCGTTCAC
GCCCCACGAATCTCGTCGCAACTGTCTGTATCAGCATGTACACTCGCGCT
CATCTACCTCGTACCTCTCCTAATATGAGCTGCATATATACATTCCAAGA
TAACAGATATGCCGCTGATGAGTGCCGACGCCGTCTGTGCAGATGAGATG
TGTTCGTGCTGTGGGTAGGACTACTGTATCACAGGCGTGCATTAGGCATA
CGCGTCGGACGATAAGCTAGTCAANTATCTATTAACATGCGCTAAGAATC
GTCCTTGTCGCGAGCATGCACGACCGTCATTAAGAGCTTCACTTACCACA
TGCCGTGGCATAATATATCGTCATTAGATCAAGAGCGGCGAGATAGTGTG
GATGTTACTACCGTACTCTCCTGTCGAGCATTTGACAACCATGCAATAAC
ACATCTATCCGAGCTACACACCGATCGTATTGCTGTNCTACAATANTACG
TAATGGTACATAGGCGTACGTCACGTAGCCGCTCTGTATTAAGTCTGTGT
CTGTACGACAGCTTGCCGTGCTGCTGTGTGCTCTTCAGCATGCTCTACAC
CGCCTCGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_i17.b1 MSMg01no440_i17.b1 CHROMAT_FILE:
MSMg01no440_i17.b1 PHD_FILE: MSMg01no440_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:02 2005
         (469 letters)



>mm_chr15_47969312_47970180
          Length = 869

 Score =  899 bits (465), Expect = 0.0
 Identities = 468/469 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttttgtagggtcagggtataatgctatgcccatatgaatacaattttaaaagaaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttttgtagggtcagggtataatgctatgcccatatgaatacaattttaaaagaaaaat 260

                                                                       
Query: 61  atatttataagccttgaattatgatatatacaatatatcttatgagatgaaagaattaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatttataagccttgaattatgatatatacaatatatcttatgagatgaaagaattaaa 320

                                                                       
Query: 121 gagaaaatgagtctatgtcctacctcatattatttgaattgtcaggtgcagaaatttaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagaaaatgagtctatgtcctacctcatattatttgaattgtcaggtgcagaaatttaat 380

                                                                       
Query: 181 aattgtatcttaaataagaacttcatagcctcctttgaattgaagtcagaaattttcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattgtatcttaaataagaacttcatagcctcctttgaattgaagtcagaaattttcttc 440

                                                                       
Query: 241 ataaagagctaaatttactagtttaatttatatccataacactttatttttctttgctaa 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 ataaagagctaaatttactagtttaaattatatccataacactttatttttctttgctaa 500

                                                                       
Query: 301 agacagtttcttctttgtctcagtagccatttattgacataaaataataaaaggtgaccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agacagtttcttctttgtctcagtagccatttattgacataaaataataaaaggtgaccc 560

                                                                       
Query: 361 tctctagcaccaagtgaaatgacccttgctattcacaaccacagaaaaggccttttcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctctagcaccaagtgaaatgacccttgctattcacaaccacagaaaaggccttttcttt 620

                                                            
Query: 421 caaacagaatctatatcaattgcccaggtcctgatatgataactgtatc 469
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaacagaatctatatcaattgcccaggtcctgatatgataactgtatc 669


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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