BAC Information

Click to search

BAC

Clone NameMSMg01-440P07
Chromosome15 (Build37)
Map Location 12,330,094 - 12,494,492
singlet/doubletdoublet
Overlap genePdzd2
Upstream geneLOC100039772, Npr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3
Downstream geneLOC100040109, 6030458C11Rik, Rnasen, Cdh6, LOC100039907, LOC666686, LOC239338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440P07.T7 (MSMg01no440_p07.b1)MSMg01-440P07.TJ (MSMg01no440_p07.g1)
ACCAG530950AG530951
length788762
length of high quality
(start - end)		502 (52 - 553)495 (82 - 576)
definitionCHROMAT_FILE: MSMg01no440_p07.b1 PHD_FILE: MSMg01no440_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:34 2005CHROMAT_FILE: MSMg01no440_p07.g1 PHD_FILE: MSMg01no440_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,330,094 - 12,330,591)(12,494,081 - 12,494,492)
sequence
NNNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTGTATACTTGGAATGCTAAGGATACAACTCAACTATCT
GCATCAAGAAATCTGATGGTCCGTGACCTTGACAAGAGACAGTGACTTCA
GTCACAGTCACTCAAATGACAGTGAAAGCAATTATAAAAGCACAAAACCT
AATAAGATCTCCCACACGCTCATGGTTTCTGGGCTCTTTTGCATCTAGCC
ACTGAACCCGTATAAGCAGTTCCAGCTTATAGGATGAAGTTTACATAAAT
GAATAAAAAGTAAGTATATTGAAATAACCAAAGATAATCTGTATAGAGTT
CTTCTATGTCATCAAATTTCTGAACTTCTGAGTCCAAATACAACAAAGTA
GATAGGAAAGCTGTTTTAATTTTGCTTTCTGTTGCTGTGATAAAATACCA
TGGCATAAACAATGCATGAGAAAGGATGTGTGTAGCTCATAATCCCAGGT
TATATTCTGTTACTCTGGGGAAGTCAAGGCAACAGGAGCTTGAAGGCTCT
GGTCAGATTTATAGTTGAAAGCATGTACTTGATTTGCTATTTCCCCCCTT
CTTCATTTCAGAACCCTTTTCTAAAAAAATGGTGGGCCCCCCCAGTTGGG
TAAATTTCCCCCCATCCTTTAAAGTTATGGGAAAATTTTCCCCCCTGAAT
AATTTGGCCCCCAGGCCCAACCTGGGGCTAAAAAAATCCCTCTCTCTGAG
AAACAAAATTCCCCCGTGGATTCCCTCATTGTTGTCTG

NNNTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAAACTAACTTGGGGT
TCCTCTGTAAGAACCACTGAATTATCTCTTCAGTCCCTGTGTTCCTATTT
TTGAAACCCCATTTTGGTTTGATTGTTAAATTTTGCTGTCAAAATAAGAA
ATATTTTGTAGATTTGTTTGCTTGTTTTTAGGTTGCTTGAGACAGGATCT
CAAGTGGTGGCCTGACATTCTTTATGTAGCCCAGGCTGGTTTCAAATTTA
TAGCAATCTTCCTACCTCGGCCTCTTGAGTACGGGGATTCCAGGTTTGGC
CTGCCATGCTTAGCAACTGACAAACATTTTCAGTTACAAAGTAGTGTGTA
TTCAATACAGGAAAGCATAAAGAAAAAGCCATCCCGCCGTGGTGATGTGC
TAGGTGACTATTCTTCTAAATTGGACACTTACATAGTGACAAATACACAC
AGTATTTATCCATCTATCTATAGATAGGGTTTGGTGGTCTCTATACCCTT
AAGGACCTGATGAATCTTGACCCCAGTACAGATGAACTGTGTGACTTCGT
ACAATTTCTTAACTCCCAAGTTTCTCTATATTAAAAGCGATAAAGAAAAC
ATTATCTAGAATTATAGAAAAATATGTATGTGAAAACTCTTCCCCCTTTT
GTCTGAAGCCCATGATACCTCCTTGGAGCGAAACCGTTATTAACTTGTAA
AGGTCTCCTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_p07.b1 MSMg01no440_p07.b1 CHROMAT_FILE:
MSMg01no440_p07.b1 PHD_FILE: MSMg01no440_p07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:34 2005
         (502 letters)



>mm_chr15_12329890_12330791
          Length = 902

 Score =  955 bits (494), Expect = 0.0
 Identities = 497/498 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgtatacttggaatgctaaggatacaactcaactatctgcatcaagaaatctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgtatacttggaatgctaaggatacaactcaactatctgcatcaagaaatctg 264

                                                                       
Query: 65  atggtccgtgaccttgacaagagacagtgacttcagtcacagtcactcaaatgacagtga 124
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 265 atggtccgtgaccttgacaagagacagtgactttagtcacagtcactcaaatgacagtga 324

                                                                       
Query: 125 aagcaattataaaagcacaaaacctaataagatctcccacacgctcatggtttctgggct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagcaattataaaagcacaaaacctaataagatctcccacacgctcatggtttctgggct 384

                                                                       
Query: 185 cttttgcatctagccactgaacccgtataagcagttccagcttataggatgaagtttaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttttgcatctagccactgaacccgtataagcagttccagcttataggatgaagtttaca 444

                                                                       
Query: 245 taaatgaataaaaagtaagtatattgaaataaccaaagataatctgtatagagttcttct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taaatgaataaaaagtaagtatattgaaataaccaaagataatctgtatagagttcttct 504

                                                                       
Query: 305 atgtcatcaaatttctgaacttctgagtccaaatacaacaaagtagataggaaagctgtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgtcatcaaatttctgaacttctgagtccaaatacaacaaagtagataggaaagctgtt 564

                                                                       
Query: 365 ttaattttgctttctgttgctgtgataaaataccatggcataaacaatgcatgagaaagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttaattttgctttctgttgctgtgataaaataccatggcataaacaatgcatgagaaagg 624

                                                                       
Query: 425 atgtgtgtagctcataatcccaggttatattctgttactctggggaagtcaaggcaacag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgtgtgtagctcataatcccaggttatattctgttactctggggaagtcaaggcaacag 684

                             
Query: 485 gagcttgaaggctctggt 502
           ||||||||||||||||||
Sbjct: 685 gagcttgaaggctctggt 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no440_p07.g1 MSMg01no440_p07.g1 CHROMAT_FILE:
MSMg01no440_p07.g1 PHD_FILE: MSMg01no440_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:34 2005
         (495 letters)



>mm_chr15_12493598_12494492
          Length = 895

 Score =  766 bits (396), Expect = 0.0
 Identities = 408/412 (99%)
 Strand = Plus / Minus

                                                                       
Query: 84  tggtttgattgttaaattttgctgtcaaaataagaaatattttgtagatttgtttgcttg 143
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 tggtttgattattaaattttgctgtcaaaataagaaatattttgtagatttgtttgcttg 836

                                                                       
Query: 144 tttttaggttgcttgagacaggatctcaagtggtggcctgacattctttatgtagcccag 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 tttttaggttgcttgagacaggatctcaagtggtggcctgacattctttatgtagcccag 776

                                                                       
Query: 204 gctggtttcaaatttatagcaatcttcctacctcggcctcttgagtacggggattccagg 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gctggtttcaaatttatagcaatcttcctacctcggcctcttgagtacggggattccagg 716

                                                                       
Query: 264 tttggcctgccatgcttagcaactgacaaacattttcagttacaaagtagtgtgtattca 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tttggcctgccatgcttagcaactgacaaacattttcagttacaaagtagtgtgtattca 656

                                                                       
Query: 324 atacaggaaagcataaagaaaaagccatcccgccgtggtgatgtgctaggtgactattct 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 atacaggaaagcataaagaaaaagccatcccgccgtggtgatgtgctaggtgactattct 596

                                                                       
Query: 384 tctaaattggacacttacatagtgacaaatacacacagtatttatccatctatctataga 443
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 595 tctaaattggacacttacatagtgacaaatatacacagtatttatccatctatctataga 536

                                                               
Query: 444 tagggtttggtggtctctatacccttaaggacctgatgaatcttgaccccag 495
           ||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 535 tagggtttggtggtctctatacccttaagaacctgatgaaccttgaccccag 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |