BAC Information

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BAC

Clone NameMSMg01-441E01
Chromosome15 (Build37)
Map Location 72,279,830 - 72,280,295
singlet/doubletsinglet
Overlap genenone
Upstream gene1700010C24Rik, LOC100040847, Col22a1
Downstream geneKcnk9, 1810044A24Rik, LOC665621, Peg13, LOC100041120, Chrac1, Eif2c2, Ptk2, LOC666053, LOC100040929
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441E01.T7 (MSMg01no441_e01.b1)MSMg01-441E01.TJ (MSMg01no441_e01.g1)
ACCAG531178AG531179
length743751
length of high quality
(start - end)
239 (83 - 321)524 (74 - 597)
definitionCHROMAT_FILE: MSMg01no441_e01.b1 PHD_FILE: MSMg01no441_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:58 2005CHROMAT_FILE: MSMg01no441_e01.g1 PHD_FILE: MSMg01no441_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGG
CGCGGAATCCAGCTTCTACTATAGAAGAGCTCATAAGATACAGGGGTTAT
TTCAAATTTTTTGTATCTGTTGAGGCTTTCTTTGTGACTAAGTCTATGGT
CAATTTTGGAGGATTCCATGAGGTGCTAAGAAGGAGGTATATCCTTTTAT
GTTTGGGTAAAATGTTCTGTAGGTATCTATTAGGTTCATTTGATTCATAT
TGTGGGTTAGTTTAATTATTTCTCTTAGTTTCTGTCTCAATAACTTGCTG
ATTGGTGAGACTGGGTTGTTGATTTTTTCCACTATCAATGTGTGGGGTTT
GATATGTGATTTAAGCTTTAGCAATGTTTTTTTTTTTTTAACAAATGTGG
GTGCCCTTGTATTTGGGGCATACATATAGATGTTCAGAATATCATCTTGC
TAAATTTTTCCTTTGATGAGTATGAAGTGTCCTTCCCTGTCTCTTTTAAT
TAATTTTGGTTGGAAGCCTATTTTATTAATATTAGAATGGCTATTCCAGC
TTCTTCACCTCTGCTGGCTGTGTCCCCAGATGGACGTGAATGTTCCTGGG
GTCCTGCACACCTCCCCGGGATAGGCAAGCAGAGCCATGGGTCAGTGAAT
GGAGATCAGAAGACAACAGGCAGATCATTTCTGCTGGCTGTGTTCAAGGG
GACCCATCTAGCAGTGTATTTGCGGGCGAGGGATCCCACCTAA
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTGCTGCAAAATTCTCCACTGAGAAATATCGAATGG
CCAAGAAGCACCTAAAGAAATAAATGTTCAACATCTTTAGTCATCAGAGA
AATACAAATCAAAACAACCCTTAGCTTCCACCTCATGCCAGTCAGAATGG
CTAAGATTAAAAACTCAGCTAAAAACAGATGCTGGCTAGCATGTGGAGAA
AGAGGAATACCACCCCGCCCCCCATTATTGGTGGGATTACAAGCTCATAC
AACCACTCTGAAAATCAGTCTGGTGTTTTTTTTTCTTAATGGTGACCTTG
GTGTTTTGTAACCATGGCCAGAAAGAGACAACTGATATAGGTGTGAGCTG
AAGGACAATCTAAGTAGCTCTGACCTGTCCTTTAAACTGCTTTCTTTCTG
CCCAAGCCAGGGCCTGGTGAAACTTTATCCCGGTTCCCTAAGCTTTGGGA
TATCTAGTGCTGACAGTGGCAGGGATTCTTGACTCTGCCAGAAACTCACA
TCCCATTCCCAGTTATGTCTGATTATCCACATCCTTGGCATATTTCTACA
AACCAGGTTTTTTCACCTTGCACTTCCTAGGCCTATATTCCTTACTGGGA
ATACACAGTGTGTATATATTGCATTTTGGAAGTCTCACAGGATCATAATT
TTTTCTTTTACATACACTTTGGAGATGACGTTTCTGGCCCTCTTTCTCCC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_e01.g1 MSMg01no441_e01.g1 CHROMAT_FILE:
MSMg01no441_e01.g1 PHD_FILE: MSMg01no441_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:58 2005
         (524 letters)



>mm_chr15_72279372_72280295
          Length = 924

 Score =  808 bits (418), Expect = 0.0
 Identities = 455/468 (97%), Gaps = 3/468 (0%)
 Strand = Plus / Minus

                                                                       
Query: 58  acatctttagtcatcagagaaatacaaatcaaaacaacccttagcttccacctcatgcca 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 acatctttagtcatcagagaaatacaaatcaaaacaacccttagcttccacctcatgcca 865

                                                                       
Query: 118 gtcagaatggctaagattaaaaactcagctaaaaacagatgctggctagcatgtggagaa 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 gtcagaatggctaagattaaaaactcagctaaaaacagatgctggctagcatgtggagaa 805

                                                                       
Query: 178 agaggaatacc-accccgccccccattattggtgggattacaagctcatacaaccactct 236
           ||||||  |||  |||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 804 agagga--acctccccctccccccattattggtgggattgcaagctcatacaaccactct 747

                                                                       
Query: 237 gaaaatcagtctggtgtttttttttcttaatggtgaccttggtgttttgtaaccatggcc 296
           | |||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ggaaatcagtctggtggttggttttcttaatggtgaccttggtgttttgtaaccatggcc 687

                                                                       
Query: 297 agaaagagacaactgatataggtgtgagctgaaggacaatctaagtagctctgacctgtc 356
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 686 agaaagagacaactgatataggtgtgagctgaaggaccatctaagtagctctgacctgtc 627

                                                                       
Query: 357 ctttaaactgctttctttctgcccaagccagggcctggtgaaactttatcccggttccct 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ctttaaactgctttctttctgcccaagccagggcctggtgaaactttatcccggttccct 567

                                                                       
Query: 417 aagctttgggatatctagtgctgacagtggcagggattcttgactctgccagaaactcac 476
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 566 aagctttgggatatctagtgctgacagtggcagggattcttgattctgccagaaactcac 507

                                                           
Query: 477 atcccattcccagttatgtctgattatccacatccttggcatatttct 524
           |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 atcccactcccagttatgtctgattatccacatccttggcatatttct 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)