BAC Information

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BAC

Clone NameMSMg01-441E10
Chromosome15 (Build37)
Map Location 20,531,926 - 20,532,167
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621884, LOC100040265
Downstream geneAcot10, LOC100040302, Cdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441E10.T7 (MSMg01no441_e10.b1)MSMg01-441E10.TJ (MSMg01no441_e10.g1)
ACCAG531196AG531197
length745741
length of high quality
(start - end)
269 (326 - 594)242 (74 - 315)
definitionCHROMAT_FILE: MSMg01no441_e10.b1 PHD_FILE: MSMg01no441_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:00 2005CHROMAT_FILE: MSMg01no441_e10.g1 PHD_FILE: MSMg01no441_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCTCAAAAATTTGCGGTCGCTATACGAATCACTTTTCAAATAGGATCCG
CGGAATTCAACATTTCATACACATATAATAGATAAATTTTGATATGGTCA
TTTCTTTCATTTGGTCAATAAGCAAAACAATAAGAAAATATGATTTGTCT
TGTGTTTAAAAAACATGGGCTAATGATAGCTATTCTTGGTTGCGAACTTG
ATTACCTCTGAAATGTATTAAAATTCAAGGAGCTAGATACACTTCAGAGA
ACTTTTTCTTTATTACTTCATGTAAAATAGAAAGAGTGTCTTTTAGTATG
ACCCATGCATTCTCATCATTCNNATCTTAAGGATATATAAAAAGGAAGCT
TTCTTTCATTGTACTTGTCCTGATTCCTTCACTGACATTAGAACTTACTT
TTTTGAGTTTCTGTACTATACCCAAGACCAGCTGAGACATCAAGCTCTCT
GAACTGCACAGTTACTAGGTTCTTGAACTTTTCTGTTTATAGAAAGCCAA
TGTTAGACTAGCTGGACCATTAGTCTGTAAGACTTTTTAATGAATTCCAT
TCACACTCCTTCTACCAGTTCTCTTACTCTAAAAAATCCTCATTAAATCA
CTAGTTACTCAATACCTTGGAATGATTTTTTGCTTGTATAAATTTTTTTC
TCTATCTTAAATGAAATTATATAACTCTAGCATTTGTATTCAGATTCCCA
AAATAATATTTTCTTCTACTTCTCTGCATAAGCAATGACTTCTAA
ACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGACACACAGAATTCCTCTTTTTTTCAGNACAGACACT
CAACACCTGTCAAAATTAGATCTTAAAATTACCTGGCATACCTCATTTTA
ATCAGCAAGTTGAAGATTCAGTAAGGTGTATTTTATGCTTATTATCTATG
TAATTTCTTGGGGAAAATGTAGTTGGGAAACATTGACACATCTGCCCTAG
TATGTTTTAATGAATTATTCCATGATGTTATTTATTTTACTAATTAAAGA
GAAATGCATCTGTTCTATTTTTTTATTATGAATGAGTTCATTGGTAATAA
AATCTATTTCTAAGAATTAATTATTTCACTTTGAAAATGGTCCCTCAATA
ACTTCTATGTGACTAAGTTTTACTAAGTTTATTAATAATGTCCATCAGCT
ACAAAGGAATGGCTGGAGTCTGTCCCAGCCTTATAGCAGAAAACATAAAT
GAGTGCATTGCACTTTGAATCCCTGATCTAGTGCAAGACAATAGCAGAAG
ATTTAACAGAAAGAGGACACACTGGTAATTAAAGAAAAGTCCGAACTGAG
ACTTTGCTGTTCGACTAGAAATGCGCGGAACTCTAAAAGTAACTGGTCTC
TTTGTTTCTAATAGAGGATTTGTCGATCTGACTTTTTACACTTGCCCTCT
TTTCTCTTGCTAGGCACACGTGTGCTATTTAGATTCGCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_e10.g1 MSMg01no441_e10.g1 CHROMAT_FILE:
MSMg01no441_e10.g1 PHD_FILE: MSMg01no441_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:00 2005
         (242 letters)



>mm_chr15_20531726_20532367
          Length = 642

 Score =  424 bits (219), Expect = e-123
 Identities = 236/242 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcctctttttttcagnacagacactcaacacctgtcaaaattagatcttaaaattacc 60
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 attcctctttttttcagtgcagacactcaacacctgtcaaaattagatcttaaaattacc 383

                                                                       
Query: 61  tggcatacctcattttaatcagcaagttgaagattcagtaaggtgtattttatgcttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 382 tggcatacctcattttaatcagcaagttgaagattcagtaaggtgtattttatgcatatt 323

                                                                       
Query: 121 atctatgtaatttcttggggaaaatgtagttgggaaacattgacacatctgccctagtat 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 322 atctatgtaatttctcggggaaaatgtagttgggaaacattgacacatctgccctaccat 263

                                                                       
Query: 181 gttttaatgaattattccatgatgttatttattttactaattaaagagaaatgcatctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gttttaatgaattattccatgatgttatttattttactaattaaagagaaatgcatctgt 203

             
Query: 241 tc 242
           ||
Sbjct: 202 tc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)