BAC Information

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BAC

Clone NameMSMg01-441E14
Chromosome15 (Build37)
Map Location 73,412,262 - 73,412,534
singlet/doubletsinglet
Overlap geneSlc45a4
Upstream gene1810044A24Rik, LOC665621, Peg13, LOC100041120, Chrac1, Eif2c2, Ptk2, LOC666053, LOC100040929, Dennd3
Downstream geneGpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966, EG666113, LOC100041307, LOC100040984, Bai1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441E14.T7 (MSMg01no441_e14.b1)MSMg01-441E14.TJ (MSMg01no441_e14.g1)
ACCAG531204AG531205
length760752
length of high quality
(start - end)
563 (69 - 631)240 (76 - 315)
definitionCHROMAT_FILE: MSMg01no441_e14.b1 PHD_FILE: MSMg01no441_e14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:00 2005CHROMAT_FILE: MSMg01no441_e14.g1 PHD_FILE: MSMg01no441_e14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:00 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACTTGACGAATACGGAATGGCAGAGAAGCACCTGAAAATGTTC
AACATCCTTAATCAACAGGGAAATGCAAATCAAAACAACCCTGAGATTCC
ACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
TTGCAAGTTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAA
AATTGGACATAGTACTATTTTAAGATTCCCCCAATACCTCTCCTGGGCAT
ATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGATCCACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAAACCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGA
TTACTACTCAGCTATTAAAAAAATGAATTTATGAAATTCCTAGGCAAATG
GATGGGCCTGGAGGGTATCATCCTGAGTGAGGTAACCCAATCACAAAGGA
ACTCTCACAATATGTACTCTCTGATAAGTGGATATTAGCCCAGAAACTTA
TGATACCCTAGATATAAGATACAATTTGTTAAACTCACGAAACTCCAGAA
GAACGAAGACCAAAGTGTGGAAACTTTGCCACTTCCTAGAAATGGGAACT
AAACACCCTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAGCGTGGATTTGGCATTGACTAC
GCTATCCTCTCCTGTCAGGTCTACATCTCCCAGATCCTGGTTGCATCTGC
CCTTGGGGGCGTGGTCGACGCTGTGAATAGTATCGTTATCATTCCCATAG
TGGCTTCTGTGGACTCTTTCCTGGGCTTCCTGACAGCCACATTCCTGGTC
ATCTACCCTGAGTTGTCCTCAGGGCCCGCTGGCGAAGGCGAGGGTGGGGC
TGGCAGTGAGAAGCCCATTGTTCTGAAGCTGTCTCTGAAAGGGGGCCTTC
GGGGGCTGCTGGAGACAGAGTCCATGGTGTGATTGATACATTCCACACTG
GAGGGCAGGGCACACTGGGGGTTATGCTTGCCCATACCGTGCGAGCTGGA
GTTCCTTCCCAGAGCACAGTCCAAGTTCAGTAGGTGTTAGGTGTAGGGTA
GGTTTGAGCTATTAAACAAAACTATCACACTAATTACCTTTCCCATGATT
AAAAAAAATCATTTGAAATCCTTTTTTATTGAATAAGAACTTAATTTCCG
CTGTCTTTTATTCTGCAGGTATACCATTTCTGCTGTTTTAAAATGGGAAA
TATTTTTGTTTATTCTATAACCAACTTAAAAAACTCCAGGTCCGCCTTTC
TAACCCTTTCTAAGAATTCGCGCAACTGACTCCCCTGCCTGATATCCTCC
GA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_e14.g1 MSMg01no441_e14.g1 CHROMAT_FILE:
MSMg01no441_e14.g1 PHD_FILE: MSMg01no441_e14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:00 2005
         (240 letters)



>mm_chr15_73412143_73412782
          Length = 640

 Score =  317 bits (164), Expect = 3e-91
 Identities = 231/274 (84%), Gaps = 35/274 (12%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagcgtggatttggcattgactacgctatcctctcctgtcaggtctacatctcccagat 60
           ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 392 caagcgtggatttggcattgactgcgccatcctctcctgtcaggtctacatctcccagat 333

                                                                       
Query: 61  cctggttgcatctgcccttgggggcgtggtcgacgctgtgaatagtatcgttatcattcc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 332 cctggttgcatctgcccttgggggcgtggtcgacgctgtgaatagtatcgttgtcatccc 273

                                                                       
Query: 121 catagtggcttctgt-ggactctttcctgggcttcctgacagccacattcctggtcatct 179
           ||||||||| ||||| || |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 272 catagtggcctctgtagg-ctctttcctgggcttcttgacagccacattcctggtcatct 214

                                                                       
Query: 180 accctgag-t--------------------------------tgtcctcagggcccgctg 206
           |||||||| |                                ||||||||||||||||||
Sbjct: 213 accctgaggtgtcagaggaacctaaggaggaacagaaaggcctgtcctcagggcccgctg 154

                                             
Query: 207 gcgaaggcgagggtggggctggcagtgagaagcc 240
           |||||||||||||||| || ||||||||||||||
Sbjct: 153 gcgaaggcgagggtggagcgggcagtgagaagcc 120


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)