BAC Information

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BAC

Clone NameMSMg01-441G09
Chromosome15 (Build37)
Map Location 88,492,026 - 88,492,256
singlet/doubletsinglet
Overlap genenone
Upstream geneAW049604, LOC100042329, LOC100042340, Zdhhc25
Downstream geneBrd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441G09.T7 (MSMg01no441_g09.b1)MSMg01-441G09.TJ (MSMg01no441_g09.g1)
ACCAG531289AG531290
length760788
length of high quality
(start - end)
234 (86 - 319)233 (76 - 308)
definitionCHROMAT_FILE: MSMg01no441_g09.b1 PHD_FILE: MSMg01no441_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:10 2005CHROMAT_FILE: MSMg01no441_g09.g1 PHD_FILE: MSMg01no441_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGATCAAAAAGTGCGGGCGGAAAAAGAANCACNTTTTCGTACTTATCCG
NGGAANNCCNGGTTAGCAAACACAAGCGATGNCTACATAGTGCCATACAG
TCCACTGGCATCCTAAAGCCCTAACACCAAGTGCAAGCCAGGGAGACTAT
ATTCCAGTCTCCCTTCTAAAAAATCTGACTTTCAAATCTCAAATGAGCAT
ACATTGCTCTCAGAAGAAAAAAAAATGAAAACCCTACTAATAAACTCTTC
CTTTTTTAACTGCACTTTCTCTAAGACAAGCAGGCAAATGAGAGCACAGG
CACCTTGCCATCTATCTTTTTTCTTGCTGGGNCCCTGTGTCCCCATCCTG
ACTAGGTCAGACTAGCACTACGGGATCAGACAGTACAGAGCCAGGACTGG
TGGCAGATCAATGTCCTTCCCAGGTCTCCACATGCACACCAGGATGTCCT
GATTACCTATGCCAACACTCAGTGTCCTCCAGAAGTGGGGTCCCTCAACC
CACACCCATACGCCCTGGCTGTAAAAAGATATTCATCCCCGGGGTTTTCC
CATAGCCCCCAGAAAATCCCGCAGACTGATTTCTTGACAGGTTCTTCCTG
ACAGTCATTTCATGCAACCTACGATCTCATATTGTCCCGTGTTTTTCTTT
TTTTTTTTTTTAGAAGCCACTTGCCCGATTCCGGACCTCCTCTATTAACC
CGCCCTGACCTTAATGCTGGAATTTTTATCTACATCTGCAATTTTGCCCC
CTTTCTCCGG
GTCGATGATAGTGNGTAGCCTGGNGGNCGCCGGTTCGTCATTCTTAGGNG
AACTATAGAATTACTAGAGCAATTCAGGAATCAATCCTGGACTTTTCTCA
GGCACTCCCAAGTTTGTGTGTGTGTGTGCACGTGCGTGTGTGTGTGTTTT
CATGTATGGTAGGTAGTGCAGGTGCATGTACATCACAATGCATGTGTAGA
GGTCAGAGGACAACCTTGCCTTCTACCTTGTTTGAAGCAGCATCTCTTTA
TTTTTTGCTGATAATGTATAACAGACCAGCTGCTTGAAAGCTTAAAGGAC
TTTCTTGNCNGCGTTTTCTTGTTCTCAGNAGGAACGCCGGGAATATATGC
AAACTGTTTTTTCCCTCTTTCATGTATGTCTGTAAATTCAAACAAGTCTT
TACACTCTTTTCACCCTTTTATTTTTTTAATTTTTTAACATCTCCCTACT
CTCTTATCTTCATCGACATTTCCTTCGCTGTTATACACTTTCTTCCTTGT
CTTTTTCCCTATAAAACATCCCTACCTGCCTTCGACTTCACCCAATTACA
TATTTCTTCCCATTTATCATTACGTCAATGAATCTCTTCTTACCCTCCCT
CTCTCCCTCTTTCTTGTTGTCTCTTTTTTTCCCCTATCTTCTTCCCCCCC
CTCCACACAAGTCTTTTTTTCTTTTCTTTTTACTACCCCCTGTCTCTTTC
TTAACCTCAATCTCACCTCTCCCCATTTGTGCGATCTTTATACCTTCCCC
GCCTTCCCCCTATTTCTCCCCTTTTTTTTATTTCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_g09.b1 MSMg01no441_g09.b1 CHROMAT_FILE:
MSMg01no441_g09.b1 PHD_FILE: MSMg01no441_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:10 2005
         (234 letters)



>mm_chr15_88491826_88492459
          Length = 634

 Score =  439 bits (227), Expect = e-128
 Identities = 230/231 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catagtgccatacagtccactggcatcctaaagccctaacaccaagtgcaagccagggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagtgccatacagtccactggcatcctaaagccctaacaccaagtgcaagccagggag 260

                                                                       
Query: 61  actatattccagtctcccttctaaaaaatctgactttcaaatctcaaatgagcatacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actatattccagtctcccttctaaaaaatctgactttcaaatctcaaatgagcatacatt 320

                                                                       
Query: 121 gctctcagaagaaaaaaaaatgaaaaccctactaataaactcttccttttttaactgcac 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctctcagaagaaaaaaaaacgaaaaccctactaataaactcttccttttttaactgcac 380

                                                              
Query: 181 tttctctaagacaagcaggcaaatgagagcacaggcaccttgccatctatc 231
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctctaagacaagcaggcaaatgagagcacaggcaccttgccatctatc 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)